Software news and updates - CHARNIM-GUI: A web-based grraphical user interface for CHARMM

被引：5888

作者：

Jo, Sunhwan ^{[3
]}

Kim, Taehoon ^{[1
,2
]}

Iyer, Vidyashankara G. ^{[3
]}

Im, Wonpil ^{[1
,2
]}

机构：

[1] Univ Kansas, Dept Mol Biosci, Lawrence, KS 66047 USA

[2] Univ Kansas, Ctr Bioinformat, Lawrence, KS 66047 USA

[3] Univ Kansas, Dept Chem, Lawrence, KS 66047 USA

来源：

JOURNAL OF COMPUTATIONAL CHEMISTRY | 2008年 / 29卷 / 11期

关键词：

molecular dynomics; Poisson-Boltzmann; electrostatic potential; membrane; visualization; explicit solvent; implicit solvent; MarvinSpace;

D O I：

10.1002/jcc.20945

中图分类号：

O6 [化学];

学科分类号：

0703 ;

摘要：

CHARMM is an academic research program used widely for macromolecular mechanics and dynamics with versatile analysis and manipulation tools of atomic coordinates and dynamics trajectories. CHARMM-GUI, http://www.charmm-gui.org, has been developed to provide a web-based graphical user interface to generate various input files and molecular systems to facilitate and standardize the usage of common and advanced simulation techniques in CHARMM. The wet) environment provides an ideal platform to build and validate a molecular model system in an interactive fashion such that, if a problem is found through Visual inspection, one can go back to the previous setup and regenerate the whole system again. In this article, we describe the currently available functional modules of CHARMM-GUI Input Generator that form a basis for the advanced simulation techniques. Future directions of the CHARMM-GUI development project are also discussed briefly together with other features in the CHARMM-GUI website, Such as Archive and Movie Gallery. (c) 2008 Wiley Periodicals, Inc.

引用

页码：1859 / 1865

页数：7

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