A HapMap harvest of insights into the genetics of common disease

被引:754
作者
Manolio, Teri A. [1 ]
Brooks, Lisa D. [1 ]
Collins, Francis S. [1 ]
机构
[1] NHGRI, Bethesda, MD 20892 USA
关键词
D O I
10.1172/JCI34772
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 [基础医学];
摘要
The International HapMap Project was designed to create a genome-wide database of patterns of human genetic variation, with the expectation that these patterns would be useful for genetic association studies of common diseases. This expectation has been amply fulfilled with just the initial output of genome-wide association studies, identifying nearly 100 loci for nearly 40 common diseases and traits. These associations provided new insights into pathophysiology, suggesting previously unsuspected etiologic pathways for common diseases that win be of use in identifying new therapeutic targets and developing targeted interventions based on genetically defined risk. In addition, HapMap-based discoveries have shed new fight on the impact of evolutionary pressures on the human genome, suggesting multiple loci important for adapting to disease-causing pathogens and new environments. In this review we examine the origin, development, and current status of the HapMap; its prospects for continued evolution; and its current and potential future impact on biomedical science.
引用
收藏
页码:1590 / 1605
页数:16
相关论文
共 136 条
[1]
A haplotype map of the human genome [J].
Altshuler, D ;
Brooks, LD ;
Chakravarti, A ;
Collins, FS ;
Daly, MJ ;
Donnelly, P ;
Gibbs, RA ;
Belmont, JW ;
Boudreau, A ;
Leal, SM ;
Hardenbol, P ;
Pasternak, S ;
Wheeler, DA ;
Willis, TD ;
Yu, FL ;
Yang, HM ;
Zeng, CQ ;
Gao, Y ;
Hu, HR ;
Hu, WT ;
Li, CH ;
Lin, W ;
Liu, SQ ;
Pan, H ;
Tang, XL ;
Wang, J ;
Wang, W ;
Yu, J ;
Zhang, B ;
Zhang, QR ;
Zhao, HB ;
Zhao, H ;
Zhou, J ;
Gabriel, SB ;
Barry, R ;
Blumenstiel, B ;
Camargo, A ;
Defelice, M ;
Faggart, M ;
Goyette, M ;
Gupta, S ;
Moore, J ;
Nguyen, H ;
Onofrio, RC ;
Parkin, M ;
Roy, J ;
Stahl, E ;
Winchester, E ;
Ziaugra, L ;
Shen, Y .
NATURE, 2005, 437 (7063) :1299-1320
[2]
[Anonymous], HUMAN HOMO SAPIENS G
[3]
[Anonymous], POL SHAR DAT OBT NIH
[4]
A common genetic variant in the NOS1 regulator NOS1AP modulates cardiac repolarization [J].
Arking, Dan E. ;
Pfeufer, Arne ;
Post, Wendy ;
Kao, W. H. Linda ;
Newton-Cheh, Christopher ;
Ikeda, Morna ;
West, Kristen ;
Kashuk, Carl ;
Akyol, Mahmut ;
Perz, Siegfried ;
Jalilzadeh, Shapour ;
Illig, Thomas ;
Gieger, Christian ;
Guo, Chao-Yu ;
Larson, Martin G. ;
Wichmann, H. Erich ;
Marban, Eduardo ;
O'Donnell, Christopher J. ;
Hirschhorn, Joel N. ;
Kaeaeb, Stefan ;
Spooner, Peter M. ;
Meitinger, Thomas ;
Chakravarti, Aravinda .
NATURE GENETICS, 2006, 38 (06) :644-651
[5]
A genome-wide association study implicates diacylglycerol kinase η (DGKH) and several other genes in the etiology of bipolar disorder [J].
Baum, A. E. ;
Akula, N. ;
Cabanero, M. ;
Cardona, I. ;
Corona, W. ;
Klemens, B. ;
Schulze, T. G. ;
Cichon, S. ;
Rietschel, M. ;
Noethen, M. M. ;
Georgi, A. ;
Schumacher, J. ;
Schwarz, M. ;
Abou Jamra, R. ;
Hoefels, S. ;
Propping, P. ;
Satagopan, J. ;
Detera-Wadleigh, S. D. ;
Hardy, J. ;
McMahon, F. J. .
MOLECULAR PSYCHIATRY, 2008, 13 (02) :197-207
[6]
Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease [J].
Botstein, D ;
Risch, N .
NATURE GENETICS, 2003, 33 (Suppl 3) :228-237
[7]
A genome-wide association study shows that common alleles of SMAD7 influence colorectal cancer risk [J].
Broderick, Peter ;
Carvajal-Carmona, Luis ;
Pittman, Alan M. ;
Webb, Emily ;
Howarth, Kimberley ;
Rowan, Andrew ;
Lubbe, Steven ;
Spain, Sarah ;
Sullivan, Kate ;
Fielding, Sarah ;
Jaeger, Emma ;
Vijayakrishnan, Jayaram ;
Kemp, Zoe ;
Gorman, Maggie ;
Chandler, Ian ;
Papaemmanuil, Elli ;
Penegar, Steven ;
Wood, Wendy ;
Sellick, Gabrielle ;
Qureshi, Mobshra ;
Teixeira, Ana ;
Domingo, Enric ;
Barclay, Ella ;
Martin, Lynn ;
Sieber, Oliver ;
Kerr, David ;
Gray, Richard ;
Peto, Julian ;
Cazier, Jean-Baptiste ;
Tomlinson, Ian ;
Houlston, Richard S. .
NATURE GENETICS, 2007, 39 (11) :1315-1317
[8]
A genome-wide association scan identifies the hepatic cholesterol transporter ABCG8 as a susceptibility factor for human gallstone disease [J].
Buch, Stephan ;
Schafmayer, Clemens ;
Volzke, Henry ;
Becker, Christian ;
Franke, Andre ;
von Eller-Eberstein, Huberta ;
Kluck, Christian ;
Bassmann, Ingelore ;
Brosch, Mario ;
Lammert, Frank ;
Miquel, Juan Francisco ;
Nervi, Flavio ;
Wittig, Michael ;
Rosskopf, Dieter ;
Timm, Birgit ;
Holl, Christine ;
Seeger, Marcus ;
ElSharawy, Abdou ;
Lu, Tim ;
Egberts, Jan ;
Fandrich, Fred ;
Folsch, Ulrich R. ;
Krawczak, Michael ;
Schreiber, Stefan ;
Nurnberg, Peter ;
Tepel, Jurgen ;
Hampe, Jochen .
NATURE GENETICS, 2007, 39 (08) :995-999
[9]
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls [J].
Burton, Paul R. ;
Clayton, David G. ;
Cardon, Lon R. ;
Craddock, Nick ;
Deloukas, Panos ;
Duncanson, Audrey ;
Kwiatkowski, Dominic P. ;
McCarthy, Mark I. ;
Ouwehand, Willem H. ;
Samani, Nilesh J. ;
Todd, John A. ;
Donnelly, Peter ;
Barrett, Jeffrey C. ;
Davison, Dan ;
Easton, Doug ;
Evans, David ;
Leung, Hin-Tak ;
Marchini, Jonathan L. ;
Morris, Andrew P. ;
Spencer, Chris C. A. ;
Tobin, Martin D. ;
Attwood, Antony P. ;
Boorman, James P. ;
Cant, Barbara ;
Everson, Ursula ;
Hussey, Judith M. ;
Jolley, Jennifer D. ;
Knight, Alexandra S. ;
Koch, Kerstin ;
Meech, Elizabeth ;
Nutland, Sarah ;
Prowse, Christopher V. ;
Stevens, Helen E. ;
Taylor, Niall C. ;
Walters, Graham R. ;
Walker, Neil M. ;
Watkins, Nicholas A. ;
Winzer, Thilo ;
Jones, Richard W. ;
McArdle, Wendy L. ;
Ring, Susan M. ;
Strachan, David P. ;
Pembrey, Marcus ;
Breen, Gerome ;
St Clair, David ;
Caesar, Sian ;
Gordon-Smith, Katherine ;
Jones, Lisa ;
Fraser, Christine ;
Green, Elain K. .
NATURE, 2007, 447 (7145) :661-678
[10]
Nature, nurture and human disease [J].
Chakravarti, A ;
Little, P .
NATURE, 2003, 421 (6921) :412-414