Biochemical reaction equilibria from the point of view of a semigrand partition function

被引:4
作者
Alberty, RA [1 ]
机构
[1] MIT, Dept Chem, Cambridge, MA 02139 USA
关键词
D O I
10.1063/1.1366638
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
When the pH is specified in studying equilibria in a system of biochemical reactions, the criterion for spontaneous change and equilibrium is provided by a transformed Gibbs energy G' that is the thermodynamic potential corresponding to a semigrand ensemble. The semigrand partition function for a system at a specified pH provides a global view of the thermodynamics of the reaction system because all the other thermodynamic properties can be calculated from this function. These operations are illustrated by a system consisting of two species with different numbers of hydrogen atoms, by a system involving two isomeric monoprotic acids, and by a series of metabolic reactions that reduce to a pseudoisomer group when the steady-state concentrations of coenzymes are specified. (C) 2001 American Institute of Physics.
引用
收藏
页码:8270 / 8274
页数:5
相关论文
共 12 条
[1]   Calculation of standard formation properties of species from standard transformed formation properties of reactants in biochemical reactions at specified pH [J].
Alberty, RA .
JOURNAL OF PHYSICAL CHEMISTRY B, 1999, 103 (01) :261-265
[2]   EQUILIBRIUM CALCULATIONS ON SYSTEMS OF BIOCHEMICAL REACTIONS AT SPECIFIED PH AND PMG [J].
ALBERTY, RA .
BIOPHYSICAL CHEMISTRY, 1992, 42 (02) :117-131
[3]   Calculation of equilibrium compositions of large systems of biochemical reactions [J].
Alberty, RA .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (19) :4807-4814
[4]   CALCULATION OF TRANSFORMED THERMODYNAMIC PROPERTIES OF BIOCHEMICAL REACTANTS AT SPECIFIED PH AND PMG [J].
ALBERTY, RA .
BIOPHYSICAL CHEMISTRY, 1992, 43 (03) :239-254
[5]   DEGREES OF FREEDOM IN A GASEOUS REACTION SYSTEM AT A SPECIFIED PARTIAL-PRESSURE OF A REACTANT [J].
ALBERTY, RA .
JOURNAL OF PHYSICAL CHEMISTRY, 1993, 97 (23) :6226-6232
[6]   Use of the matrix form of the fundamental equations for transformed gibbs energies of biochemical reaction systems at three levels [J].
Alberty, RA .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (03) :650-657
[7]   USE OF SEMIGRAND ENSEMBLES IN CHEMICAL-EQUILIBRIUM CALCULATIONS ON COMPLEX ORGANIC-SYSTEMS [J].
ALBERTY, RA ;
OPPENHEIM, I .
JOURNAL OF CHEMICAL PHYSICS, 1989, 91 (03) :1824-1828
[8]  
Callen H B, 1985, THERMODYNAMICS INTRO, P388
[9]   THERMODYNAMICS OF THE DISPROPORTIONATION OF ADENOSINE 5'-DIPHOSPHATE TO ADENOSINE 5'-TRIPHOSPHATE AND ADENOSINE 5'-MONOPHOSPHATE .1. EQUILIBRIUM-MODEL [J].
GOLDBERG, RN ;
TEWARI, YB .
BIOPHYSICAL CHEMISTRY, 1991, 40 (03) :241-261
[10]  
GREINER W, 1995, THERMODYNAMICS STAT, P245