Extra stable 2′,5′-linked RNA loops

被引:3
作者
Hannoush, RN [1 ]
Damha, MJ [1 ]
机构
[1] McGill Univ, Dept Chem, Montreal, PQ H3A 2K6, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
D O I
10.1081/NCN-100002519
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We prepared hairpins that differ in the connectivity of phosphodiester linkages in the loop (RNA vs 2', 5'-RNA). We find that the stability of the extra stable RNA hairpin 5'-rGGAC(UUCG)GUCC-3' is the same as that observed for the hairpin containing a 2',5'RNA loop, i.e. 5'-rGGAC(UUCG)GUCC-3' (where UUCG = U2'p5'U2',p5' C(2'p5')G(2'p5')). Also significant is the finding that when the stem is duplex DNA, duplex 2,5'-RNA, or DNA:2',5'-RNA, hairpins with the UUCG loop are more stable than those with UUCG loop.
引用
收藏
页码:1201 / 1204
页数:4
相关论文
共 8 条
[1]   STRUCTURE OF THE P1 HELIX FROM GROUP-I SELF-SPLICING INTRONS [J].
ALLAIN, FHT ;
VARANI, G .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 250 (03) :333-353
[2]   A THERMODYNAMIC STUDY OF UNUSUALLY STABLE RNA AND DNA HAIRPINS [J].
ANTAO, VP ;
LAI, SY ;
TINOCO, I .
NUCLEIC ACIDS RESEARCH, 1991, 19 (21) :5901-5905
[3]   SOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA HAIRPIN, 5'GGAC(UUCG)GUCC [J].
CHEONG, CJ ;
VARANI, G ;
TINOCO, I .
NATURE, 1990, 346 (6285) :680-682
[4]   OLIGORIBONUCLEOTIDES CONTAINING 2',5'-PHOSPHODIESTER LINKAGES EXHIBIT BINDING SELECTIVITY FOR 3',5'-RNA OVER 3',5'-SSDNA [J].
GIANNARIS, PA ;
DAMHA, MJ .
NUCLEIC ACIDS RESEARCH, 1993, 21 (20) :4742-4749
[5]   INFLUENCE OF PHOSPHODIESTER LINKAGE (3'-5', 2'-5', AND 5'-5') ON CONFORMATION OF DINUCLEOSIDE MONOPHOSPHATE [J].
KONDO, NS ;
HOLMES, HM ;
STEMPEL, LM ;
TSO, POP .
BIOCHEMISTRY, 1970, 9 (18) :3479-&
[6]   STUDIES ON THE STRUCTURE AND STABILIZING FACTOR OF THE CUUCGG HAIRPIN RNA USING CHEMICALLY SYNTHESIZED OLIGONUCLEOTIDES [J].
SAKATA, T ;
HIROAKI, H ;
ODA, Y ;
TANAKA, T ;
IKEHARA, M ;
UESUGI, S .
NUCLEIC ACIDS RESEARCH, 1990, 18 (13) :3831-3839
[7]   CUUCGG HAIRPINS - EXTRAORDINARILY STABLE RNA SECONDARY STRUCTURES ASSOCIATED WITH VARIOUS BIOCHEMICAL PROCESSES [J].
TUERK, C ;
GAUSS, P ;
THERMES, C ;
GROEBE, DR ;
GAYLE, M ;
GUILD, N ;
STORMO, G ;
DAUBENTONCARAFA, Y ;
UHLENBECK, OC ;
TINOCO, I ;
BRODY, EN ;
GOLD, L .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (05) :1364-1368
[8]   Physicochemical and biochemical properties of 2′,5′-linked RNA and 2′,5′-RNA:3′,5′-RNA "hybrid" duplexes [J].
Wasner, M ;
Arion, D ;
Borkow, G ;
Noronha, A ;
Uddin, AH ;
Parniak, MA ;
Damha, MJ .
BIOCHEMISTRY, 1998, 37 (20) :7478-7486