Application of distance geometry to 3D visualization of sequence relationships

被引：8

作者：

Forster, MJ ^{[1
]}

Heath, AB ^{[1
]}

Afzal, MA ^{[1
]}

机构：

[1] Natl Inst Biol Stand & Controls, S Mimms EN6 3QG, Herts, England

来源：

BIOINFORMATICS | 1999年 / 15卷 / 01期

关键词：

D O I：

10.1093/bioinformatics/15.1.89

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

We describe the application of distance geometry methods to the three-dimensional visualization of sequence relationships, with examples for mumps virus SH gene cDNA and prion protein sequences. Sequence-sequence distance measures may be obtained from either a multiple sequence alignment or from sets of pairwise alignments.

引用

页码：89 / 90

页数：2

共 15 条

[1] Clustering of mumps virus isolates by SH gene sequence only partially reflects geographical origin
Afzal, MA
Buchanan, J
Heath, AB
Minor, PD
[J]. ARCHIVES OF VIROLOGY, 1997, 142 (02) : 227 - 238
[2] Agrafiotis DK, 1997, PROTEIN SCI, V6, P287
[3] BLANEY JM, 1990, DGEOM AUTHORS
[4] DISTANCE GEOMETRY AND RELATED METHODS FOR PROTEIN-STRUCTURE DETERMINATION FROM NMR DATA
BRAUN, W
[J]. QUARTERLY REVIEWS OF BIOPHYSICS, 1987, 19 (3-4) : 115 - 157
[5] Casari G, 1995, STRUCT BIOL, V2, P171
[6] Crippen G.M., 1988, DISTANCE GEOMETRY MO
[7] GOWER JC, 1966, BIOMETRIKA, V53, P325, DOI 10.2307/2333639
[8] GENERAL COEFFICIENT OF SIMILARITY AND SOME OF ITS PROPERTIES
GOWER, JC
[J]. BIOMETRICS, 1971, 27 (04) : 857 - &
[9] AN EVALUATION OF THE COMBINED USE OF NUCLEAR MAGNETIC-RESONANCE AND DISTANCE GEOMETRY FOR THE DETERMINATION OF PROTEIN CONFORMATIONS IN SOLUTION
HAVEL, TF
WUTHRICH, K
[J]. JOURNAL OF MOLECULAR BIOLOGY, 1985, 182 (02) : 281 - 294
[10] A NEW METHOD FOR BUILDING PROTEIN CONFORMATIONS FROM SEQUENCE ALIGNMENTS WITH HOMOLOGS OF KNOWN STRUCTURE
HAVEL, TF
SNOW, ME
[J]. JOURNAL OF MOLECULAR BIOLOGY, 1991, 217 (01) : 1 - 7

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