Sequence changes in predicted promoter elements of STK11/LKB1 are unlikely to contribute to Peutz-Jeghers syndrome -: art. no. 38

被引:12
作者
Hearle, NCM [1 ]
Tomlinson, I
Lim, W
Murday, V
Swarbrick, E
Lim, G
Phillips, R
Lee, P
O'Donohue, J
Trembath, RC
Morrison, PJ
Norman, A
Taylor, R
Hodgson, S
Lucassen, A
Houlston, RS
机构
[1] Inst Canc Res, Sect Canc Genet, Sutton, Surrey, England
[2] Imperial Canc Res Fund, Mol & Populat Genet Lab, London WC2A 3PX, England
[3] Yorkhill Hosp, Dept Med Genet, Glasgow, Lanark, Scotland
[4] New Cross Hosp, Dept Gastroenterol, Wolverhampton, W Midlands, England
[5] Epsom Gen Hosp, Dept Gastroenterol, Epsom, Surrey, England
[6] St Marks Hosp, Polyposis Registry, Harrow, Middx, England
[7] Hull Royal Infirm, Dept Surg, Kingston Upon Hull, N Humberside, England
[8] Univ Hosp Lewisham, Dept Gastroenterol, London, England
[9] Leicester Royal Infirm, Dept Clin Genet, Leicester, Leics, England
[10] Belfast City Hosp, Dept Med Genet, Belfast, Antrim, North Ireland
[11] Birmingham Womens Hosp, Clin Genet Unit, Birmingham, W Midlands, England
[12] Univ London St Georges Hosp, Sch Med, Mol Genet Unit, London SW17 0RE, England
[13] Univ London St Georges Hosp, Dept Clin Genet, London, England
[14] Princess Anne Hosp, Wessex Clin Genet Serv, Southampton, Hants, England
关键词
D O I
10.1186/1471-2164-6-38
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Background: Germline mutations or large-scale deletions in the coding region and splice sites of STK11/LKB1 do not account for all cases of Peutz-Jeghers syndrome (PJS). It is conceivable that, on the basis of data from other diseases, inherited variation in promoter elements of STK11/LKB1 may cause PJS. Results: Phylogenetic foot printing and transcription factor binding site prediction of sequence 5' to the coding sequence of STK11/LKB1 was performed to identify non-coding sequences of DNA indicative of regulatory elements. A series of 33 PJS cases in whom no mutation in STK11/LKB1 could be identified were screened for sequence changes in the putative promoter defined by nucleotides-1090 to -1472. Two novel sequence changes were identified, but were found to be present in healthy individuals. Conclusion: These findings indicate that promoter sequence changes are unlikely to contribute to PJS.
引用
收藏
页数:5
相关论文
共 26 条
  • [1] Boardman LA, 2000, HUM MUTAT, V16, P23, DOI 10.1002/1098-1004(200007)16:1<23::AID-HUMU5>3.0.CO
  • [2] 2-M
  • [3] Germline hMLH1 promoter mutation in a Newfoundland HNPCC kindred
    Green, RC
    Green, AG
    Simms, M
    Pater, A
    Robb, JD
    Green, JS
    [J]. CLINICAL GENETICS, 2003, 64 (03) : 220 - 227
  • [4] A serine/threonine kinase gene defective in Peutz-Jegheus syndrome
    Hemminki, A
    Markie, D
    Tomlinson, I
    Avizienyte, E
    Roth, S
    Loukola, A
    Bignell, G
    Warren, W
    Aminoff, M
    Höglund, P
    Järvinen, H
    Kristo, P
    Pelin, K
    Ridanpää, M
    Salovaara, R
    Toro, T
    Bodmer, W
    Olschwang, S
    Olsen, AS
    Stratton, MR
    de la Chapelle, A
    Aaltonen, LA
    [J]. NATURE, 1998, 391 (6663) : 184 - 187
  • [5] Peutz-Jeghers syndrome is caused by mutations in a novel serine threonine kinase
    Jenne, DE
    Reimann, H
    Nezu, J
    Friedel, W
    Loff, S
    Jeschke, R
    Müller, D
    Back, W
    Zimmer, M
    [J]. NATURE GENETICS, 1998, 18 (01) : 38 - 44
  • [6] STK11/LKB1 germline mutations are not identified in most Peutz-Jeghers syndrome patients
    Jiang, CY
    Esufali, S
    Berk, T
    Gallinger, S
    Cohen, Z
    Tobi, M
    Redston, M
    Bapat, B
    [J]. CLINICAL GENETICS, 1999, 56 (02) : 136 - 141
  • [7] Lenhard Boris, 2003, J Biol, V2, P13, DOI 10.1186/1475-4924-2-13
  • [8] Further observations on LKB1/STK11 status and cancer risk in Peutz-Jeghers syndrome
    Lim, W
    Hearle, N
    Shah, B
    Murday, V
    Hodgson, SV
    Lucassen, A
    Eccles, D
    Talbot, I
    Neale, K
    Lim, AG
    O'Donohue, J
    Donaldson, A
    Macdonald, RC
    Young, ID
    Robinson, MH
    Lee, PWR
    Stoodley, BJ
    Tomlinson, I
    Alderson, D
    Holbrook, AG
    Vyas, S
    Swarbrick, ET
    Lewis, AAM
    Phillips, RKS
    Houlston, RS
    [J]. BRITISH JOURNAL OF CANCER, 2003, 89 (02) : 308 - 313
  • [9] rVista for comparative sequence-based discovery of functional transcription factor binding sites
    Loots, GG
    Ovcharenko, I
    Pachter, L
    Dubchak, I
    Rubin, EM
    [J]. GENOME RESEARCH, 2002, 12 (05) : 832 - 839
  • [10] Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
    Loots, GG
    Locksley, RM
    Blakespoor, CM
    Wang, ZE
    Miller, W
    Rubin, EM
    Frazer, KA
    [J]. SCIENCE, 2000, 288 (5463) : 136 - 140