A van der Waals density functional study of adenine on graphene: single-molecular adsorption and overlayer binding

被引:57
作者
Berland, Kristian [4 ]
Chakarova-Kack, Svetla D. [1 ]
Cooper, Valentino R. [2 ,3 ]
Langreth, David C. [2 ]
Schroder, Elsebeth [4 ]
机构
[1] Chalmers Univ Technol, Dept Appl Phys, SE-41296 Gothenburg, Sweden
[2] Rutgers State Univ, Dept Phys & Astron, Piscataway, NJ 08854 USA
[3] Oak Ridge Natl Lab, Div Mat Sci & Technol, Oak Ridge, TN 37831 USA
[4] Chalmers Univ Technol, Dept Microtechnol & Nanosci, MC2, SE-41296 Gothenburg, Sweden
基金
美国国家科学基金会; 瑞典研究理事会;
关键词
GENERALIZED GRADIENT APPROXIMATION; STACKING INTERACTIONS; BENZENE;
D O I
10.1088/0953-8984/23/13/135001
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
The adsorption of an adenine molecule on graphene is studied using a first-principles van der Waals functional, vdW-DF (Dion et al 2004 Phys. Rev. Lett. 92 246401). The cohesive energy of an ordered adenine overlayer is also estimated. For the adsorption of a single molecule, we determine the optimal binding configuration and adsorption energy by translating and rotating the molecule. The adsorption energy for a single molecule of adenine is found to be 711 meV, which is close to the calculated adsorption energy of the similarly sized naphthalene. On the basis of the single-molecular binding configuration, we estimate the cohesive energy of a two-dimensional ordered overlayer. We find a significantly stronger binding energy for the ordered overlayer than for single-molecule adsorption.
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页数:8
相关论文
共 53 条
[1]   Structures and interaction energies of stacked graphene-nucleobase complexes [J].
Antony, Jens ;
Grimme, Stefan .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2008, 10 (19) :2722-2729
[2]   Rings sliding on a honeycomb network: Adsorption contours, interactions, and assembly of benzene on Cu(111) [J].
Berland, K. ;
Einstein, T. L. ;
Hyldgaard, P. .
PHYSICAL REVIEW B, 2009, 80 (15)
[3]  
Berland K., 2010, ARXIV10073305V1
[4]   Structure and binding in crystals of cagelike molecules: Hexamine and platonic hydrocarbons [J].
Berland, Kristian ;
Hyldgaard, Per .
JOURNAL OF CHEMICAL PHYSICS, 2010, 132 (13)
[5]   van der Waals interactions of the benzene dimer:: Towards treatment of polycyclic aromatic hydrocarbon dimers [J].
Chakarova, SD ;
Schröder, E .
MATERIALS SCIENCE & ENGINEERING C-BIOMIMETIC AND SUPRAMOLECULAR SYSTEMS, 2005, 25 (5-8) :787-792
[6]   Application of van der Waals density functional to an extended system:: Adsorption of benzene and naphthalene on graphite [J].
Chakarova-Käck, SD ;
Schröder, E ;
Lundqvist, BI ;
Langreth, DC .
PHYSICAL REVIEW LETTERS, 2006, 96 (14)
[7]   Adsorption of phenol on graphite(0001) and α-Al2O3(0001):: Nature of van der Waals bonds from first-principles calculations [J].
Chakarova-Kack, Svetla D. ;
Borck, Oyvind ;
Schroder, Elsebeth ;
Lundqvist, Bengt I. .
PHYSICAL REVIEW B, 2006, 74 (15)
[8]   Binding of polycyclic aromatic hydrocarbons and graphene dimers in density functional theory [J].
Chakarova-Kack, Svetla D. ;
Vojvodic, Aleksandra ;
Kleis, Jesper ;
Hyldgaard, Per ;
Schroder, Elsebeth .
NEW JOURNAL OF PHYSICS, 2010, 12
[9]   Self-assembly of adenine on Cu(110) surfaces [J].
Chen, Q ;
Frankel, DJ ;
Richardson, NV .
LANGMUIR, 2002, 18 (08) :3219-3225
[10]   Stacking interactions and the twist of DNA [J].
Cooper, Valentino R. ;
Thonhauser, Timo ;
Puzder, Aaron ;
Schroder, Elsebeth ;
Lundqvist, Bengt I. ;
Langreth, David C. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (04) :1304-1308