The PLIN4 Variant rs8887 Modulates Obesity Related Phenotypes in Humans through Creation of a Novel miR-522 Seed Site

被引:38
作者
Richardson, Kris [1 ]
Louie-Gao, Qiong [2 ]
Arnett, Donna K. [3 ,4 ]
Parnell, Laurence D. [1 ]
Lai, Chao-Qiang [1 ]
Davalos, Alberto [5 ,6 ,7 ,10 ]
Fox, Caroline S. [8 ,9 ]
Demissie, Serkalem [2 ]
Cupples, L. Adrienne [2 ,8 ]
Fernandez-Hernando, Carlos [5 ,6 ,7 ]
Ordovas, Jose M. [1 ,11 ]
机构
[1] Tufts Univ, Human Nutr Res Ctr Aging, Jean Mayer US Dept Agr, Nutr & Genom Lab, Boston, MA 02111 USA
[2] Boston Univ, Sch Publ Hlth, Dept Biostat, Boston, MA USA
[3] Univ Alabama Birmingham, Sch Publ Hlth, Dept Epidemiol, Birmingham, AL 35294 USA
[4] Univ Alabama Birmingham, Clin Nutr Res Ctr, Birmingham, AL USA
[5] NYU, Sch Med, Dept Med, Leon H Charney Div Cardiol, New York, NY USA
[6] NYU, Sch Med, Dept Cell Biol, Leon H Charney Div Cardiol, New York, NY 10016 USA
[7] NYU, Sch Med, Vasc Biol & Dis Program, Marc & Ruti Bell Program, New York, NY 10016 USA
[8] NHLBI, Framingham Heart Study, Framingham, MA USA
[9] NHLBI, Ctr Populat Studies, Framingham, MA USA
[10] Inst Madrileno Estudios Avanzados IMDEA Alimentac, Madrid, Spain
[11] CNIC, Dept Cardiovasc Epidemiol & Populat Genet, Madrid, Spain
来源
PLOS ONE | 2011年 / 6卷 / 04期
关键词
FOOD FREQUENCY QUESTIONNAIRE; BODY-MASS INDEX; NF-KAPPA-B; PERILIPIN GENE; ADIPOSE-TISSUE; FATTY-ACIDS; TNF-ALPHA; MESSENGER-RNAS; EXPRESSION; RISK;
D O I
10.1371/journal.pone.0017944
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
PLIN4 is a member of the PAT family of lipid storage droplet (LSD) proteins. Associations between seven single nucleotide polymorphisms (SNPs) at human PLIN4 with obesity related phenotypes were investigated using meta-analysis followed by a determination if these phenotypes are modulated by interactions between PLIN4 SNPs and dietary PUFA. Samples consisted of subjects from two populations of European ancestry. We demonstrated association of rs8887 with anthropometrics. Meta-analysis demonstrated significant interactions between the rs8887 minor allele with PUFA n3 modulating anthropometrics. rs884164 showed interaction with both n3 and n6 PUFA modulating anthropometric and lipid phenotypes. In silico analysis of the PLIN4 3'UTR sequence surrounding the rs8887 minor A allele predicted a seed site for the human microRNA-522 (miR-522), suggesting a functional mechanism. Our data showed that a PLIN4 3'UTR luciferase reporter carrying the A allele of rs8887 was reduced in response to miR-522 mimics compared to the G allele. These results suggest variation at the PLIN4 locus, and its interaction with PUFA as a modulator of obesity related phenotypes, acts in part through creation of a miR-522 regulatory site.
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页数:11
相关论文
共 54 条
[1]   Interrogating a high-density SNP map for signatures of natural selection [J].
Akey, JM ;
Zhang, G ;
Zhang, K ;
Jin, L ;
Shriver, MD .
GENOME RESEARCH, 2002, 12 (12) :1805-1814
[2]   Haploview: analysis and visualization of LD and haplotype maps [J].
Barrett, JC ;
Fry, B ;
Maller, J ;
Daly, MJ .
BIOINFORMATICS, 2005, 21 (02) :263-265
[3]   The genetics of human obesity [J].
Bell, CG ;
Walley, AJ ;
Froguel, P .
NATURE REVIEWS GENETICS, 2005, 6 (03) :221-234
[4]   Identification of hundreds of conserved and nonconserved human microRNAs [J].
Bentwich, I ;
Avniel, A ;
Karov, Y ;
Aharonov, R ;
Gilad, S ;
Barad, O ;
Barzilai, A ;
Einat, P ;
Einav, U ;
Meiri, E ;
Sharon, E ;
Spector, Y ;
Bentwich, Z .
NATURE GENETICS, 2005, 37 (07) :766-770
[5]   The microRNA.org resource: targets and expression [J].
Betel, Doron ;
Wilson, Manda ;
Gabow, Aaron ;
Marks, Debora S. ;
Sander, Chris .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D149-D153
[6]   The perilipin family of structural lipid droplet proteins: stabilization of lipid droplets and control of lipolysis [J].
Brasaemle, Dawn L. .
JOURNAL OF LIPID RESEARCH, 2007, 48 (12) :2547-2559
[7]   Principles of MicroRNA-target recognition [J].
Brennecke, J ;
Stark, A ;
Russell, RB ;
Cohen, SM .
PLOS BIOLOGY, 2005, 3 (03) :404-418
[8]   Nuclear factor kB is activated by arachidonic acid but not by eicosapentaenoic acid [J].
Camandola, S ;
Leonarduzzi, G ;
Musso, T ;
Varesio, L ;
Carini, R ;
Scavazza, A ;
Chiarpotto, E ;
Baeuerle, PA ;
Poli, G .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1996, 229 (02) :643-647
[9]   SNP@Evolution: a hierarchical database of positive selection on the human genome [J].
Cheng, Feng ;
Chen, Wei ;
Richards, Elliott ;
Deng, Libin ;
Zeng, Changqing .
BMC EVOLUTIONARY BIOLOGY, 2009, 9
[10]   Single nucleotide polymorphisms that influence lipid metabolism: Interaction with dietary factors [J].
Corella, D ;
Ordovas, JM .
ANNUAL REVIEW OF NUTRITION, 2005, 25 :341-390