Hexamminecobalt(III)-induced condensation of calf thymus DNA: circular dichroism and hydration measurements

被引:119
作者
Kankia, BI [1 ]
Buckin, V
Bloomfield, VA
机构
[1] Univ Nebraska, Med Ctr 986025, Dept Pharmaceut Sci, Omaha, NE 68198 USA
[2] Univ Minnesota, Dept Biochem, St Paul, MN 55108 USA
[3] Univ Coll Dublin, Dept Chem, Dublin 4, Ireland
关键词
D O I
10.1093/nar/29.13.2795
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The interaction of hexamminecobalt(III), Co(NH3)(6)(3+) with 160 and 3000-8000 bp length calf thymus DNA has been investigated by circular dichroism, acoustic and densimetric techniques. The acoustic titration curves of 160 bp DNA revealed three stages of interaction: (i) Co(NH3)(6)(3+) binding up to the molar ratio [Co(NH3)(6)(3+)]/[P] = 0.25, prior to DNA condensation; (ii) a condensation process between [Co(NH3)(6)(3+)]/[P] = 0.25 and 0.30; and (iii) precipitation after [Co(NH3)(6)(3+)]/[P] = 0.3. In the case of 3000-8000 bp DNA only two processes were observed: (i) binding up to [Co(NH3)(6)(3+)]/[P] = 0.3; and (ii) precipitation after this point. In agreement with earlier observations, long DNA aggregates without changes in its B-form circular dichroism spectrum, while short DNA demonstrates a positive B --> Psi transition after [Co(NH3)(6)(3+)]/[P] = 0.25, From ultrasonic and densimetric measurements the effects of Co(NH3)(6)(3+) binding on volume and compressibility have been obtained. The binding of Co(NH3)(6)(3+) to both short and long DNA is characterized by similar changes in volume and compressibility calculated per mole Co(NH3)(6)(3+): DeltaV= 9 cm(3) mol(-1) and Delta kappa = 33 x 10(-4) cm(3) mol(-1) bar(-1). The positive sign of the parameters indicates dehydration, i.e, water release from Co(NH3)(6)(3+) and the atomic groups of DNA, This extent of water displacement would be consistent with the formation of two direct, hydrogen bonded contacts between the cation and the phosphates of DNA.
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页码:2795 / 2801
页数:7
相关论文
共 69 条
[1]   COMPLEXES OF DNA WITH HISTONES F2A2 AND F3 - CIRCULAR-DICHROISM STUDIES [J].
ADLER, AJ ;
MORAN, EC ;
FASMAN, GD .
BIOCHEMISTRY, 1975, 14 (19) :4179-4185
[2]   DNA CONDENSATION BY COBALT HEXAAMMINE(III) IN ALCOHOL-WATER MIXTURES - DIELECTRIC-CONSTANT AND OTHER SOLVENT EFFECTS [J].
ARSCOTT, PG ;
MA, CL ;
WENNER, JR ;
BLOOMFIELD, VA .
BIOPOLYMERS, 1995, 36 (03) :345-364
[3]   THE VELOCITY OF SOUND IN ELECTROLYTIC SOLUTIONS [J].
BARNARTT, S .
JOURNAL OF CHEMICAL PHYSICS, 1952, 20 (02) :278-279
[4]   STRUCTURAL INVESTIGATIONS OF CALCIUM-BINDING MOLECULES .4. CALCIUM-BINDING TO AMINOCARBOXYLATES - CRYSTAL-STRUCTURES OF CA(CAEDTA)-7H2O AND NA(CANTA) [J].
BARNETT, BL ;
UCHTMAN, VA .
INORGANIC CHEMISTRY, 1979, 18 (10) :2674-2678
[5]  
Bloomfield VA, 1997, BIOPOLYMERS, V44, P269, DOI 10.1002/(SICI)1097-0282(1997)44:3<269::AID-BIP6>3.0.CO
[6]  
2-T
[7]   CONDENSATION OF DNA BY MULTIVALENT CATIONS - CONSIDERATIONS ON MECHANISM [J].
BLOOMFIELD, VA .
BIOPOLYMERS, 1991, 31 (13) :1471-1481
[8]   STUDY OF CONFORMATION OF NUCLEIC ACIDS IN SOLUTION BY MEANS OF CIRCULAR DICHROISM [J].
BRAHMS, J ;
MOMMAERTS, WFH .
JOURNAL OF MOLECULAR BIOLOGY, 1964, 10 (01) :73-+
[9]   STRUCTURE OF A Z-DNA WITH 2 DIFFERENT BACKBONE CHAIN CONFORMATIONS - STABILIZATION OF THE DECADEOXYOLIGONUCLEOTIDE D(CGTACGTACG) BY [CO(NH3)6]3+ BINDING TO THE GUANINE [J].
BRENNAN, RG ;
WESTHOF, E ;
SUNDARALINGAM, M .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 1986, 3 (04) :649-665
[10]   Hydration effects accompanying the substitution of counterions in the ionic atmosphere of poly(rA)center dot poly(rU) and poly(rA)center dot 2poly(rU) helices [J].
Buckin, V ;
Tran, H ;
Morozov, V ;
Marky, LA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (30) :7033-7039