Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å

被引:3179
作者
Umena, Yasufumi [2 ]
Kawakami, Keisuke [1 ]
Shen, Jian-Ren [1 ]
Kamiya, Nobuo [2 ]
机构
[1] Okayama Univ, Fac Sci, Grad Sch Nat Sci & Technol, Div Biosci, Okayama 7008530, Japan
[2] Osaka City Univ, Grad Sch Sci, Dept Chem, Osaka 5588585, Japan
关键词
DIFFRACTION DATA; WATER; BINDING; PROTEIN; MECHANISM; OXIDATION; MANGANESE; CHANNELS; CLUSTER; CRYSTALLOGRAPHY;
D O I
10.1038/nature09913
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Photosystem II is the site of photosynthetic water oxidation and contains 20 subunits with a total molecular mass of 350 kDa. The structure of photosystem II has been reported at resolutions from 3.8 to 2.9 angstrom. These resolutions have provided much information on the arrangement of protein subunits and cofactors but are insufficient to reveal the detailed structure of the catalytic centre of water splitting. Here we report the crystal structure of photosystem II at a resolution of 1.9 angstrom. From our electron density map, we located all of the metal atoms of the Mn4CaO5 cluster, together with all of their ligands. We found that five oxygen atoms served as oxo bridges linking the five metal atoms, and that four water molecules were bound to the Mn4CaO5 cluster; some of them may therefore serve as substrates for dioxygen formation. We identified more than 1,300 water molecules in each photosystem II monomer. Some of them formed extensive hydrogen-bonding networks that may serve as channels for protons, water or oxygen molecules. The determination of the high-resolution structure of photosystem II will allow us to analyse and understand its functions in great detail.
引用
收藏
页码:55 / U65
页数:7
相关论文
共 40 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   Crystal Structure of Monomeric Photosystem II from Thermosynechococcus elongatus at 3.6-Å Resolution [J].
Broser, Matthias ;
Gabdulkhakov, Azat ;
Kern, Jan ;
Guskov, Albert ;
Mueh, Frank ;
Saenger, Wolfram ;
Zouni, Athina .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (34) :26255-26262
[3]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[4]  
BURRELL JWK, 1959, P CHEM SOC LONDON, P263
[5]   An evaluation of structural models for the photosynthetic water-oxidizing complex derived from spectroscopic and X-ray diffraction signatures [J].
Carrell, TG ;
Tyryshkin, AM ;
Dismukes, GC .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2002, 7 (1-2) :2-22
[6]   AMINO-ACID-RESIDUES THAT INFLUENCE THE BINDING OF MANGANESE OR CALCIUM TO PHOTOSYSTEM-II .1. THE LUMENAL INTERHELICAL DOMAINS OF THE D1 POLYPEPTIDE [J].
CHU, HA ;
NGUYEN, AP ;
DEBUS, RJ .
BIOCHEMISTRY, 1995, 34 (17) :5839-5858
[7]  
CRABBE P, 1959, P CHEM SOC LONDON, P264
[8]   Remarks about protein structure precision [J].
Cruickshank, DWJ .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1999, 55 :583-601
[9]   COMPARISON OF 2 CRYSTAL-STRUCTURES OF TGF-BETA-2 - THE ACCURACY OF REFINED PROTEIN STRUCTURES [J].
DAOPIN, S ;
DAVIES, DR ;
SCHLUNEGGER, MP ;
GRUTTER, MG .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1994, 50 :85-92
[10]   Protein ligation of the photosynthetic oxygen-evolving center [J].
Debus, Richard J. .
COORDINATION CHEMISTRY REVIEWS, 2008, 252 (3-4) :244-258