Crystal structure of the β-glycosidase from the hyperthermophile Thermosphaera aggregans:: insights into its activity and thermostability

被引:72
作者
Chi, YI
Martinez-Cruz, LA
Jancarik, J
Swanson, RV
Robertson, DE
Kim, SH [1 ]
机构
[1] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA
[3] Diversa Corp, San Diego, CA 92121 USA
关键词
beta-glycosidase; crystal structure; glycosyl hydrolase; hyperthermophile; thermostability;
D O I
10.1016/S0014-5793(99)00090-3
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The glycosyl hydrolases are an important group of enzymes that are responsible for cleaving a range of biologically significant carbohydrate compounds. Structural information on these enzymes has provided useful information on their molecular basis for the functional variations, while the characterization of the structural features that account for the high thermostability of proteins is of great scientific and biotechnological interest. To these ends we have determined the crystal structure of the beta-glycosidase from a hyperthermophilic archeon Thermosphaera a aggregans. The structure is a (beta/alpha)(8) barrel (TIM-barrel), as seen in other glycosyl hydrolase family 1 members, and forms a tetramer. Inspection of the active site and the surrounding area reveals two catalytic glutamate residues consistent with the retaining mechanism and the surrounding polar and aromatic residues consistent with a monosaccharide binding site. Comparison of this structure with its mesophilic counterparts implicates a variety of structural features that could contribute to the thermostability. These include an increased number of surface ion pairs, an increased number of internal water molecules and a decreased surface area upon forming an oligomeric quaternary structure. (C) 1999 Federation of European Biochemical Societies.
引用
收藏
页码:375 / 383
页数:9
相关论文
共 44 条
  • [1] Crystal structure of the beta-glycosidase from the hyperthermophilic archeon Sulfolobus solfataricus: Resilience as a key factor in thermostability
    Aguilar, CF
    Sanderson, I
    Moracci, M
    Ciaramella, M
    Nucci, R
    Rossi, M
    Pearl, LH
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1997, 271 (05) : 789 - 802
  • [2] THE CRYSTAL-STRUCTURE OF A CYANOGENIC BETA-GLUCOSIDASE FROM WHITE CLOVER, A FAMILY-1 GLYCOSYL HYDROLASE
    BARRETT, T
    SURESH, CG
    TOLLEY, SP
    DODSON, EJ
    HUGHES, MA
    [J]. STRUCTURE, 1995, 3 (09) : 951 - 960
  • [3] Comparison of a beta-glucosidase and a beta-mannosidase from the hyperthermophilic archaeon Pyrococcus furiosus - Purification, characterization, gene cloning, and sequence analysis
    Bauer, MW
    Bylina, EJ
    Swanson, RV
    Kelly, RM
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 1996, 271 (39) : 23749 - 23755
  • [4] Brunger A.T., 1992, X-Plor Manual Version 3.1
  • [5] The crystal structures of Sinapis alba myrosinase and a covalent glycosyl-enzyme intermediate provide insights into the substrate recognition and active-site machinery of an S-glycosidase
    Burmeister, WP
    Cottaz, S
    Driguez, H
    Iori, R
    Palmieri, S
    Henrissat, B
    [J]. STRUCTURE, 1997, 5 (05) : 663 - 675
  • [6] STRUCTURES AND MECHANISMS OF GLYCOSYL HYDROLASES
    DAVIES, G
    HENRISSAT, B
    [J]. STRUCTURE, 1995, 3 (09) : 853 - 859
  • [7] The crystal structure of a hyperthermophilic archaeal TATA-box binding protein
    DeDecker, BS
    OBrien, R
    Fleming, PJ
    Geiger, JH
    Jackson, SP
    Sigler, PB
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1996, 264 (05) : 1072 - 1084
  • [8] CRYSTAL-STRUCTURE OF RECOMBINANT TRIOSEPHOSPHATE ISOMERASE FROM BACILLUS-STEAROTHERMOPHILUS - AN ANALYSIS OF POTENTIAL THERMOSTABILITY FACTORS IN 6 ISOMERASES WITH KNOWN 3-DIMENSIONAL STRUCTURES POINTS TO THE IMPORTANCE OF HYDROPHOBIC INTERACTIONS
    DELBONI, LF
    MANDE, SC
    RENTIERDELRUE, F
    MAINFROID, V
    TURLEY, S
    VELLIEUX, FMD
    MARTIAL, JA
    HOL, WGJ
    [J]. PROTEIN SCIENCE, 1995, 4 (12) : 2594 - 2604
  • [9] Formylmethanofuran: Tetrahydromethanopterin formyltransferase from Methanopyrus kandleri - New insights into salt-dependence and thermostability
    Ermler, U
    Merckel, MC
    Thauer, RK
    Shima, S
    [J]. STRUCTURE, 1997, 5 (05) : 635 - 646
  • [10] Harris GW, 1997, PROTEINS, V29, P77, DOI 10.1002/(SICI)1097-0134(199709)29:1<77::AID-PROT6>3.3.CO