The stochastic edge in adaptive evolution

被引:52
作者
Brunet, Eric [4 ]
Rouzine, Igor M. [5 ]
Wilke, Claus O. [1 ,2 ,3 ]
机构
[1] Univ Texas Austin, Austin, TX 78712 USA
[2] Univ Texas Austin, Inst Cell & Mol Biol, Sect Integrat Biol, Austin, TX 78712 USA
[3] Univ Texas Austin, Ctr Computat Biol & Bioinformat, Austin, TX 78712 USA
[4] Ecole Normale Super, Phys Stat Lab, F-75230 Paris 05, France
[5] Tufts Univ, Dept Mol Biol & Microbiol, Boston, MA 02111 USA
关键词
D O I
10.1534/genetics.107.079319
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In a recent article, Desai and Fisher proposed that the speed of adaptation in an asexual population is determined by the dynamics of the stochastic edge of the population, that is, by the emergence and subsequent establishment of rare mutants that exceed the fitness of all sequences currently present in the population. Desai and Fisher perform an elaborate stochastic calculation of the mean time tau until a new class of mutants has been established and interpret 1/tau as the speed of adaptation. As they note, however, their calculations are valid only for moderate speeds. This limitation arises from their method to determine T: Desai and Fisher back extrapolate the value of T from the best-fit class's exponential growth at infinite time. This approach is not valid when the population adapts rapidly, because in this case the best-fit class grows nonexponentially during the relevant time interval. Here, we substantially extend Desai and Fisher's analysis of the stochastic edge. We show that we can apply Desai and Fisher's method to high speeds by either exponentially back extrapolating from finite time or using a nonexponential back extrapolation. Our results are compatible with predictions made using a different analytical approach (Rouzine et al.) and agree well with numerical simulations.
引用
收藏
页码:603 / 620
页数:18
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