Choose your partners: dimerization in eukaryotic transcription factors

被引:210
作者
Amoutzias, Grigoris D. [2 ,3 ]
Robertson, David L. [4 ]
Van de Peer, Yves [2 ,3 ]
Oliver, Stephen G. [1 ]
机构
[1] Univ Cambridge, Dept Biochem, Sanger Bldg,80 Tennis Court Rd, Cambridge CB2 1GA, England
[2] Univ Ghent VIB, Dept Plant Syst Biol, B-9000 Ghent, Belgium
[3] Univ Ghent, Dept Mol Genet, B-9052 Ghent, Belgium
[4] Univ Manchester, Fac Life Sci, Manchester M13 9PT, Lancs, England
基金
英国生物技术与生命科学研究理事会;
关键词
D O I
10.1016/j.tibs.2008.02.002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In many eukaryotic transcription factor gene families, proteins require a physical interaction with an identical molecule or with another molecule within the same family to form a functional dimer and bind DNA. Depending on the choice of partner and the cellular context, each dimer triggers a sequence of regulatory events that lead to a particular cellular fate, for example, proliferation or differentiation. Recent syntheses of genomic and functional data reveal that partner choice is not random; instead, dimerization specificities, which are strongly linked to the evolution of the protein family, apply. Our focus is on understanding these interaction specificities, their functional consequences and how they evolved. This knowledge is essential for understanding gene regulation and designing a new generation of drugs.
引用
收藏
页码:220 / 229
页数:10
相关论文
共 75 条
[1]   Automated yeast two-hybrid screening for nuclear receptor-interacting proteins [J].
Albers, M ;
Kranz, H ;
Kober, I ;
Kaiser, C ;
Klink, M ;
Suckow, J ;
Kern, R ;
Koegl, M .
MOLECULAR & CELLULAR PROTEOMICS, 2005, 4 (02) :205-213
[2]   Potential artefacts in protein-interaction networks [J].
Aloy, P ;
Russell, RB .
FEBS LETTERS, 2002, 530 (1-3) :253-254
[3]   An ancestral MADS-box gene duplication occurred before the divergence of plants and animals [J].
Alvarez-Buylla, ER ;
Pelaz, S ;
Liljegren, SJ ;
Gold, SE ;
Burgeff, C ;
Ditta, GS ;
de Pouplana, LR ;
Martinez-Castilla, L ;
Yanofsky, MF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (10) :5328-5333
[4]   One billion years of bZIP transcription factor evolution: Conservation and change in dimerization and DNA-binding site specificity [J].
Amoutzias, G. D. ;
Veron, A. S. ;
Weiner, J., III ;
Robinson-Rechavi, M. ;
Bornberg-Bauer, E. ;
Oliver, S. G. ;
Robertson, D. L. .
MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (03) :827-835
[5]   Convergent evolution of gene networks by single-gene duplications in higher eukaryotes [J].
Amoutzias, GD ;
Robertson, DL ;
Oliver, SG ;
Bornberg-Bauer, E .
EMBO REPORTS, 2004, 5 (03) :274-279
[6]   A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network [J].
Amoutzias, Gregory D. ;
Pichler, Elgar E. ;
Mian, Nina ;
De Graaf, David ;
Imsiridou, Anastasia ;
Robinson-Rechavi, Marc ;
Bornberg-Bauer, Erich ;
Robertson, David L. ;
Oliver, Stephen G. .
BMC SYSTEMS BIOLOGY, 2007, 1
[7]   Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network [J].
Amoutzias, Gregory D. ;
Bornberg-Bauer, Erich ;
Oliver, Stephen G. ;
Robertson, David L. .
BMC GENOMICS, 2006, 7 (1)
[8]   Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana [J].
Bailey, PC ;
Martin, C ;
Toledo-Ortiz, G ;
Quail, PH ;
Huq, E ;
Heim, MA ;
Jakoby, M ;
Werber, M ;
Weisshaar, B .
PLANT CELL, 2003, 15 (11) :2497-2501
[9]   Network biology:: Understanding the cell's functional organization [J].
Barabási, AL ;
Oltvai, ZN .
NATURE REVIEWS GENETICS, 2004, 5 (02) :101-U15
[10]   Evolutionary and physiological importance of hub proteins [J].
Batada, Nizar N. ;
Hurst, Laurence D. ;
Tyers, Mike .
PLOS COMPUTATIONAL BIOLOGY, 2006, 2 (07) :748-756