The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl

被引：198

作者：

Bombarely, Aureliano ^{[1
]}

Menda, Naama ^{[1
]}

Tecle, Isaak Y. ^{[1
]}

Buels, Robert M. ^{[1
]}

Strickler, Susan ^{[1
]}

Fischer-York, Thomas ^{[1
]}

Pujar, Anuradha ^{[1
]}

Leto, Jonathan ^{[1
]}

Gosselin, Joseph ^{[1
]}

Mueller, Lukas A. ^{[1
]}

机构：

[1] Cornell Univ, Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA

来源：

NUCLEIC ACIDS RESEARCH | 2011年 / 39卷

基金：

美国农业部; 美国国家科学基金会;

关键词：

INFORMATION RESOURCE; PROTEIN SEQUENCES; HIGH-THROUGHPUT; FRUIT SHAPE; DATABASE; PROTEOMICS; ALIGNMENT; ARABIDOPSIS; ANNOTATION; EXPRESSION;

D O I：

10.1093/nar/gkq866

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The Sol Genomics Network (SGN; http://solgenomics.net/) is a clade-oriented database (COD) containing biological data for species in the Solanaceae and their close relatives, with data types ranging from chromosomes and genes to phenotypes and accessions. SGN hosts several genome maps and sequences, including a pre-release of the tomato (Solanum lycopersicum cv Heinz 1706) reference genome. A new transcriptome component has been added to store RNA-seq and microarray data. SGN is also an open source software project, continuously developing and improving a complex system for storing, integrating and analyzing data. All code and development work is publicly visible on GitHub (http://github.com). The database architecture combines SGN-specific schemas and the community-developed Chado schema (http://gmod.org/wiki/Chado) for compatibility with other genome databases. The SGN curation model is community-driven, allowing researchers to add and edit information using simple web tools. Currently, over a hundred community annotators help curate the database. SGN can be accessed at http://solgenomics.net/.

引用

页码：D1149 / D1155

页数：7

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