CRISPR/Cas System and Its Role in Phage-Bacteria Interactions

被引：432

作者：

Deveau, Helene ^{[1
]}

Garneau, Josiane E. ^{[1
]}

Moineau, Sylvain ^{[1
]}

机构：

[1] Univ Laval, Dept Biochim Microbiol & Bioinformat, Fac Sci & Genie, Grp Rech Ecol Buccal,Fac Med Dent,Felix Herelle R, Quebec City, PQ C1V 0A6, Canada

来源：

ANNUAL REVIEW OF MICROBIOLOGY, VOL 64, 2010 | 2010年 / 64卷

关键词：

foreign DNA resistance; adaptation; interference; genome typing; evolution; HORIZONTAL GENE-TRANSFER; RAY CRYSTAL-STRUCTURE; MYCOBACTERIUM-TUBERCULOSIS; COMPARATIVE GENOMICS; ACQUIRED-RESISTANCE; ANTIVIRAL DEFENSE; HOST-RANGE; PROTEIN; RNAS; EVOLUTION;

D O I：

10.1146/annurev.micro.112408.134123

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Clustered regularly interspaced short palindromic repeats (CRISPRs) along with Cas proteins is a widespread system across bacteria and archaea that causes interference against foreign nucleic acids The CRISPR/Cas system acts in at least two general stages the adaptation stage, where the cell acquires new spacer sequences derived from foreign DNA, and the interference stage, which uses the recently acquired spacers to target and cleave invasive nucleic acid The CRISPR/Cas system participates in a constant evolutionary battle between phages and bacteria through addition or deletion of spacers in host cells and mutations or deletion in phage genomes This review describes the recent progress made in this fast-expanding field

引用

页码：475 / 493

页数：19

共 92 条

[1] Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens [J].

Achtman, Mark .

ANNUAL REVIEW OF MICROBIOLOGY, 2008, 62 :53-70

[2] Transcription Profile of Thermus thermophilus CRISPR Systems after Phage Infection [J].

Agari, Yoshihiro ;

Sakamoto, Keiko ;

Tamakoshi, Masatada ;

Oshima, Tairo ;

Kuramitsu, Seiki ;

Shinkai, Akeo .

JOURNAL OF MOLECULAR BIOLOGY, 2010, 395 (02) :270-281

[3] X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermaphilus HB8 [J].

Agari, Yoshihiro ;

Yokoyama, Shigeyuki ;

Kuramitsu, Seiki ;

Shinkai, Akeo .

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, 73 (04) :1063-1067

[4] Virus population dynamics and acquired virus resistance in natural microbial communities [J].

Andersson, Anders F. ;

Banfield, Jillian F. .

SCIENCE, 2008, 320 (5879) :1047-1050

[5] Spoligotyping profile change caused by deletion of a direct variable repeat in a Mycobacterium tuberculosis isogenic laboratory strain [J].

Aranaz, A ;

Romero, B ;

Montero, N ;

Alvarez, J ;

Bezos, J ;

de Juan, L ;

Mateos, A ;

Domínguez, L .

JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (11) :5388-5391

[6]

Barrangou R., 2009, MICROBE, V4, P224, DOI DOI 10.1128/MICROBE.4.224.1

[7] CRISPR provides acquired resistance against viruses in prokaryotes [J].

Barrangou, Rodolphe ;

Fremaux, Christophe ;

Deveau, Helene ;

Richards, Melissa ;

Boyaval, Patrick ;

Moineau, Sylvain ;

Romero, Dennis A. ;

Horvath, Philippe .

SCIENCE, 2007, 315 (5819) :1709-1712

[8] A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats [J].

Beloglazova, Natalia ;

Brown, Greg ;

Zimmerman, Matthew D. ;

Proudfoot, Michael ;

Makarova, Kira S. ;

Kudritska, Marina ;

Kochinyan, Samvel ;

Wang, Shuren ;

Chruszcz, Maksymilian ;

Minor, Wladek ;

Koonin, Eugene V. ;

Edwards, Aled M. ;

Savchenko, Alexei ;

Yakunin, Alexander F. .

JOURNAL OF BIOLOGICAL CHEMISTRY, 2008, 283 (29) :20361-20371

[9] RISCy business: MicroRNAs, pathogenesis, and viruses [J].

Berkhout, Ben ;

Jeang, Kuan-Teh .

JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (37) :26641-26645

[10] CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats [J].

Bland, Charles ;

Ramsey, Teresa L. ;

Sabree, Fareedah ;

Lowe, Micheal ;

Brown, Kyndall ;

Kyrpides, Nikos C. ;

Hugenholtz, Philip .

BMC BIOINFORMATICS, 2007, 8 (1)

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