Mapplet:: a CORBA-based genome map viewer

被引：7

作者：

Jungfer, K ^{[1
]}

Rodriguez-Tomé, P ^{[1
]}

机构：

[1] European Bioinformat Inst, EMBL Outstn Hinxton, Cambridge CB10 1SD, England

来源：

BIOINFORMATICS | 1998年 / 14卷 / 08期

关键词：

D O I：

10.1093/bioinformatics/14.8.734

中图分类号：

Q5 [生物化学];

学科分类号：

071010 [生物化学与分子生物学]; 081704 [应用化学];

摘要：

Motivation: There are a large number of genetic and physical maps, distributed at many sites. Each site offers different kinds of access methods and viewers. CORBA, the defacto standard for distributed object-oriented computing, offers new opportunities to unify the view on these maps through standard interfaces. A collaboration of Infobiogen and the EBI proposes a common IDL for maps. Results: A CORBA map viewer is presented which serves as a proof of concept for the proposed IDL. It demonstrates its usefulness in the context of map viewing and its ability to handle large maps with >1000 markers. The viewer gives access to the maps of the Radiation Hybrid Database at EBI. It gives a quick overview of several large maps side by side. The marker density at each map position is displayed and different marker types can be highlighted.

引用

页码：734 / 738

页数：5

共 10 条

[1]

HuGeMap: a distributed and integrated Human Genome Map database [J].

Barillot, E ;

Guyon, F ;

Cussat-Blanc, C ;

Viara, E ;

Vaysseix, G .

NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :106-107

[2]

A comprehensive genetic map of the human genome based on 5,264 microsatellites [J].

Dib, C ;

Faure, S ;

Fizames, C ;

Samson, D ;

Drouot, N ;

Vignal, A ;

Millasseau, P ;

Marc, S ;

Hazan, J ;

Seboun, E ;

Lathrop, M ;

Gyapay, G ;

Morissette, J ;

Weissenbach, J .

NATURE, 1996, 380 (6570) :152-154

[3]

Design and implementation of a CORBA-based genome mapping system prototype [J].

Hu, J ;

Mungall, C ;

Nicholson, D ;

Archibald, AL .

BIOINFORMATICS, 1998, 14 (02) :112-120

[4]

AN STS-BASED MAP OF THE HUMAN GENOME [J].

HUDSON, TJ ;

STEIN, LD ;

GERETY, SS ;

MA, JL ;

CASTLE, AB ;

SILVA, J ;

SLONIM, DK ;

BAPTISTA, R ;

KRUGLYAK, L ;

XU, SH ;

HU, XT ;

COLBERT, AME ;

ROSENBERG, C ;

REEVEDALY, MP ;

ROZEN, S ;

HUI, L ;

WU, XY ;

VESTERGAARD, C ;

WILSON, KM ;

BAE, JS ;

MAITRA, S ;

GANIATSAS, S ;

EVANS, CA ;

DEANGELIS, MM ;

INGALLS, KA ;

NAHF, RW ;

HORTON, LT ;

ANDERSON, MO ;

COLLYMORE, AJ ;

YE, WJ ;

KOUYOUMJIAN, V ;

ZEMSTEVA, IS ;

TAM, J ;

DEVINE, R ;

COURTNEY, DF ;

RENAUD, MT ;

NGUYEN, H ;

OCONNOR, TJ ;

FIZAMES, C ;

FAURE, S ;

GYAPAY, G ;

DIB, C ;

MORISSETTE, J ;

ORLIN, JB ;

BIRREN, BW ;

GOODMAN, N ;

WEISSENBACH, J ;

HAWKINS, TL ;

FOOTE, S ;

PAGE, DC .

SCIENCE, 1995, 270 (5244) :1945-1954

[5]

The Radiation Hybrid Database [J].

Lijnzaad, P ;

Helgesen, C ;

Rodriguez-Tomé, P .

NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :102-105

[6]

ORFALI R, 1998, INSTANT CORBA

[7]

RODRIGUEZTOME P, 1997, ISMB, V5, P250

[8]

A gene map of the human genome [J].

Schuler, GD ;

Boguski, MS ;

Stewart, EA ;

Stein, LD ;

Gyapay, G ;

Rice, K ;

White, RE ;

RodriguezTome, P ;

Aggarwal, A ;

Bajorek, E ;

Bentolila, S ;

Birren, BB ;

Butler, A ;

Castle, AB ;

Chiannilkulchai, N ;

Chu, A ;

Clee, C ;

Cowles, S ;

Day, PJR ;

Dibling, T ;

Drouot, N ;

Dunham, I ;

Duprat, S ;

East, C ;

Edwards, C ;

Fan, JB ;

Fang, N ;

Fizames, C ;

Garrett, C ;

Green, L ;

Hadley, D ;

Harris, M ;

Harrison, P ;

Brady, S ;

Hicks, A ;

Holloway, E ;

Hui, L ;

Hussain, S ;

LouisDitSully, C ;

Ma, J ;

MacGilvery, A ;

Mader, C ;

Maratukulam, A ;

Matise, TC ;

McKusick, KB ;

Morissette, J ;

Mungall, A ;

Muselet, D ;

Nusbaum, HC ;

Page, DC .

SCIENCE, 1996, 274 (5287) :540-546

[9]

SESSIONS R, 1997, COM CDOM MICROSOFTS

[10]

SIEGEL J, 1996, CORBA FUNDAMENTALS P

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