Genome Sequences of Three Tunicamycin-Producing Streptomyces Strains, S. chartreusis NRRL 12338, S. chartreusis NRRL 3882, and S. lysosuperificus ATCC 31396

被引:24
作者
Doroghazi, James R. [2 ,3 ]
Ju, Kou-San [2 ,3 ]
Brown, Daren W.
Labeda, David P.
Deng, Zixin [6 ,7 ]
Metcalf, William W. [2 ,3 ]
Chen, Wenqing [4 ,5 ,6 ,7 ]
Price, Neil P. J. [1 ]
机构
[1] ARS, Renewable Prod Technol Res Unit, NCAUR, USDA, Peoria, IL 61604 USA
[2] Univ Illinois, Dept Microbiol, Urbana, IL 61801 USA
[3] Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USA
[4] Wuhan Univ, Key Lab Combinatorial Biosynth & New Drug Discove, Minist Educ, Wuhan 430071, Peoples R China
[5] Wuhan Univ, Sch Pharmaceut Sci, Wuhan 430071, Peoples R China
[6] Shanghai Jiao Tong Univ, Lab Microbial Metab, Shanghai 200030, Peoples R China
[7] Shanghai Jiao Tong Univ, Sch Life Sci & Biotechnol, Shanghai 200030, Peoples R China
基金
美国国家卫生研究院;
关键词
BIOSYNTHESIS;
D O I
10.1128/JB.06262-11
中图分类号
Q93 [微生物学];
学科分类号
071005 [微生物学];
摘要
We announce the sequencing of Streptomyces chartreusis NRRL 12338 and NRRL 3882 and Streptomyces lysosuperificus ATCC 31396. These are producers of tunicamycins, chartreusins, cephalosporins, holomycins, and calcimycin. The announced genomes, together with the published Streptomyces clavuligerus genome, will facilitate data mining of these secondary metabolites.
引用
收藏
页码:7021 / 7022
页数:2
相关论文
共 15 条
[1]
Scaffolding pre-assembled contigs using SSPACE [J].
Boetzer, Marten ;
Henkel, Christiaan V. ;
Jansen, Hans J. ;
Butler, Derek ;
Pirovano, Walter .
BIOINFORMATICS, 2011, 27 (04) :578-579
[2]
De novo fragment assembly with short mate-paired reads: Does the read length matter? [J].
Chaisson, Mark J. ;
Brinza, Dumitru ;
Pevzner, Pavel A. .
GENOME RESEARCH, 2009, 19 (02) :336-346
[3]
Characterization of the tunicamycin gene cluster unveiling unique steps involved in its biosynthesis [J].
Chen, Wenqing ;
Qu, Dongjing ;
Zhai, Lipeng ;
Tao, Meifeng ;
Wang, Yemin ;
Lin, Shuangjun ;
Price, Neil P. J. ;
Deng, Zixin .
PROTEIN & CELL, 2010, 1 (12) :1093-1105
[4]
TUNICAMYCINS, STREPTOVIRUDINS, AND CORYNETOXINS, A SPECIAL SUBCLASS OF NUCLEOSIDE ANTIBIOTICS [J].
ECKARDT, K .
JOURNAL OF NATURAL PRODUCTS, 1983, 46 (04) :544-550
[5]
Prodigal: prokaryotic gene recognition and translation initiation site identification [J].
Hyatt, Doug ;
Chen, Gwo-Liang ;
LoCascio, Philip F. ;
Land, Miriam L. ;
Larimer, Frank W. ;
Hauser, Loren J. .
BMC BIOINFORMATICS, 2010, 11
[6]
Identification of the gene cluster for the dithiolopyrrolone antibiotic holomycin in Streptomyces clavuligerus [J].
Li, Bo ;
Walsh, Christopher T. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (46) :19731-19735
[7]
De novo assembly of human genomes with massively parallel short read sequencing [J].
Li, Ruiqiang ;
Zhu, Hongmei ;
Ruan, Jue ;
Qian, Wubin ;
Fang, Xiaodong ;
Shi, Zhongbin ;
Li, Yingrui ;
Li, Shengting ;
Shan, Gao ;
Kristiansen, Karsten ;
Li, Songgang ;
Yang, Huanming ;
Wang, Jian ;
Wang, Jun .
GENOME RESEARCH, 2010, 20 (02) :265-272
[8]
Genome sequencing in microfabricated high-density picolitre reactors [J].
Margulies, M ;
Egholm, M ;
Altman, WE ;
Attiya, S ;
Bader, JS ;
Bemben, LA ;
Berka, J ;
Braverman, MS ;
Chen, YJ ;
Chen, ZT ;
Dewell, SB ;
Du, L ;
Fierro, JM ;
Gomes, XV ;
Godwin, BC ;
He, W ;
Helgesen, S ;
Ho, CH ;
Irzyk, GP ;
Jando, SC ;
Alenquer, MLI ;
Jarvie, TP ;
Jirage, KB ;
Kim, JB ;
Knight, JR ;
Lanza, JR ;
Leamon, JH ;
Lefkowitz, SM ;
Lei, M ;
Li, J ;
Lohman, KL ;
Lu, H ;
Makhijani, VB ;
McDade, KE ;
McKenna, MP ;
Myers, EW ;
Nickerson, E ;
Nobile, JR ;
Plant, R ;
Puc, BP ;
Ronan, MT ;
Roth, GT ;
Sarkis, GJ ;
Simons, JF ;
Simpson, JW ;
Srinivasan, M ;
Tartaro, KR ;
Tomasz, A ;
Vogt, KA ;
Volkmer, GA .
NATURE, 2005, 437 (7057) :376-380
[9]
The clavulanic acid biosynthetic cluster of Streptomyces clavuligerus:: genetic organization of the region upstream of the car gene [J].
Mellado, E ;
Lorenzana, LM ;
Rodríguez-Sáiz, M ;
Díez, B ;
Liras, P ;
Barredo, JL .
MICROBIOLOGY-SGM, 2002, 148 :1427-1438
[10]
TAMURA G, 1982, TUNICAMYCINS, P10