Collaborative analysis of multi-gigapixel imaging data using Cytomine

被引：126

作者：

Maree, Raphael ^{[1
,2
,3
]}

Rollus, Loic ^{[1
,2
]}

Stevens, Benjamin ^{[1
,2
]}

Hoyoux, Renaud ^{[1
,2
]}

Louppe, Gilles ^{[1
,2
]}

Vandaele, Remy ^{[1
,2
]}

Begon, Jean-Michel ^{[1
,2
]}

Kainz, Philipp ^{[4
]}

Geurts, Pierre ^{[1
,2
]}

Wehenkel, Louis ^{[1
,2
]}

机构：

[1] Univ Liege, Dept Elect Engn & Comp Sci, Syst & Modeling, Liege, Belgium

[2] Univ Liege, GIGA Res, Liege, Belgium

[3] Inst Pasteur, Bioimage Anal Unit, Paris, France

[4] Med Univ Graz, Inst Biophys, Graz, Austria

来源：

BIOINFORMATICS | 2016年 / 32卷 / 09期

关键词：

BIOIMAGE INFORMATICS; PLATFORM;

D O I：

10.1093/bioinformatics/btw013

中图分类号：

Q5 [生物化学];

学科分类号：

070307 [化学生物学];

摘要：

Motivation: Collaborative analysis of massive imaging datasets is essential to enable scientific discoveries. Results: We developed Cytomine to foster active and distributed collaboration of multidisciplinary teams for large-scale image-based studies. It uses web development methodologies and machine learning in order to readily organize, explore, share and analyze (semantically and quantitatively) multi-gigapixel imaging data over the internet. We illustrate how it has been used in several biomedical applications.

引用

页码：1395 / 1401

页数：7

共 36 条

[1]

Zebrafish Bone and General Physiology Are Differently Affected by Hormones or Changes in Gravity [J].

Aceto, Jessica ;

Nourizadeh-Lillabadi, Rasoul ;

Maree, Raphael ;

Dardenne, Nadia ;

Jeanray, Nathalie ;

Wehenkel, Louis ;

Alestrom, Peter ;

van Loon, Jack J. W. A. ;

Muller, Marc .

PLOS ONE, 2015, 10 (06)

[2]

Allan C, 2012, NAT METHODS, V9, P245, DOI [10.1038/NMETH.1896, 10.1038/nmeth.1896]

[3]

The data deluge [J].

不详 .

NATURE CELL BIOLOGY, 2012, 14 (08) :775-775

[4]

[Anonymous], 2011, NAT METHODS, V8, P885

[5]

[Anonymous], 2014, NAT METHODS, V11, P213

[6]

Evaluation of BRCA1-related molecular features and microRNAs as prognostic factors for triple negative breast cancers [J].

Boukerroucha, Meriem ;

Josse, Claire ;

ElGuendi, Sonia ;

Boujemla, Bouchra ;

Freres, Pierre ;

Maree, Raphal ;

Wenric, Stephane ;

Segers, Karin ;

Collignon, Joelle ;

Jerusalem, Guy ;

Bours, Vincent .

BMC CANCER, 2015, 15

[7]

CellProfiler: image analysis software for identifying and quantifying cell phenotypes [J].

Carpenter, Anne E. ;

Jones, Thouis Ray ;

Lamprecht, Michael R. ;

Clarke, Colin ;

Kang, In Han ;

Friman, Ola ;

Guertin, David A. ;

Chang, Joo Han ;

Lindquist, Robert A. ;

Moffat, Jason ;

Golland, Polina ;

Sabatini, David M. .

GENOME BIOLOGY, 2006, 7 (10)

[8]

A call for bioimaging software usability [J].

Carpenter, Anne E. ;

Kamentsky, Lee ;

Eliceiri, Kevin W. .

NATURE METHODS, 2012, 9 (07) :666-670

[9]

Galaxy Zoo Volunteers Share Pain and Glory of Research [J].

Clery, Daniel .

SCIENCE, 2011, 333 (6039) :173-175

[10]

de Chaumont F, 2012, NAT METHODS, V9, P690, DOI [10.1038/NMETH.2075, 10.1038/nmeth.2075]

← 1 2 3 4 →