Genetic variants in microRNA genes: impact on microRNA expression, function, and disease

被引:118
作者
Cammaerts, Sophia [1 ]
Strazisar, Mojca [1 ]
De Rijk, Peter [1 ]
Del Favero, Jurgen [1 ,2 ]
机构
[1] Univ Antwerp VIB, Dept Mol Genet, Appl Mol Genom Unit, B-2610 Antwerp, Belgium
[2] Multiplicom NV, Niel, Belgium
关键词
RNA-BINDING PROTEIN; NUCLEAR EXPORT; PRE-MICRORNA; HUMAN DICER; POSTTRANSCRIPTIONAL REGULATION; WIDE IDENTIFICATION; SECONDARY STRUCTURE; TARGET SITES; HUMAN CANCER; SEED REGION;
D O I
10.3389/fgene.2015.00186
中图分类号
Q3 [遗传学];
学科分类号
071007 [遗传学];
摘要
MicroRNAs (miRNAs) are important regulators of gene expression and like any other gene, their coding sequences are subject to genetic variation. Variants in miRNA genes can have profound effects on miRNA functionality at all levels, including miRNA transcription, maturation, and target specificity, and as such they can also contribute to disease. The impact of variants in miRNA genes is the focus of the present review. To put these effects into context, we first discuss the requirements of miRNA transcripts for maturation. In the last part an overview of available databases and tools and experimental approaches to investigate miRNA variants related to human disease is presented.
引用
收藏
页数:12
相关论文
共 121 条
[1]
Abdelfattah Ahmed Maher, 2014, Biomol Concepts, V5, P275, DOI 10.1515/bmc-2014-0012
[2]
PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors [J].
Ahmed, Firoz ;
Kaundal, Rakesh ;
Raghava, Gajendra P. S. .
BMC BIOINFORMATICS, 2013, 14
[3]
Prediction of guide strand of microRNAs from its sequence and secondary structure [J].
Ahmed, Firoz ;
Ansari, Hifzur Rahman ;
Raghava, Gajendra P. S. .
BMC BIOINFORMATICS, 2009, 10
[4]
Beyond Secondary Structure: Primary-Sequence Determinants License Pri-miRNA Hairpins for Processing [J].
Auyeung, Vincent C. ;
Ulitsky, Igor ;
McGeary, Sean E. ;
Bartel, David P. .
CELL, 2013, 152 (04) :844-858
[5]
Differential regulation of microRNA stability [J].
Bail, Sophie ;
Swerdel, Mavis ;
Liu, Hudan ;
Jiao, Xinfu ;
Goff, Loyal A. ;
Hart, Ronald P. ;
Kiledjian, Megerditch .
RNA, 2010, 16 (05) :1032-1039
[6]
MicroRNAs: Target Recognition and Regulatory Functions [J].
Bartel, David P. .
CELL, 2009, 136 (02) :215-233
[7]
Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes [J].
Baskerville, S ;
Bartel, DP .
RNA, 2005, 11 (03) :241-247
[8]
Role for a bidentate ribonuclease in the initiation step of RNA interference [J].
Bernstein, E ;
Caudy, AA ;
Hammond, SM ;
Hannon, GJ .
NATURE, 2001, 409 (6818) :363-366
[9]
miRvar: A Comprehensive Database for Genomic Variations in microRNAs [J].
Bhartiya, Deeksha ;
Laddha, Saurabh V. ;
Mukhopadhyay, Arijit ;
Scaria, Vinod .
HUMAN MUTATION, 2011, 32 (06) :E2226-E2245
[10]
PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways [J].
Bhattacharya, Anindya ;
Ziebarth, Jesse D. ;
Cui, Yan .
NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D86-D91