Survey of the number of two-component response regulator genes in the complete and annotated genome sequences of prokaryotes

被引：47

作者：

Ashby, MK ^{[1
]}

机构：

[1] Univ W Indies, Biochem Sect, Dept Basic Med Sci, Kingston 7, Jamaica

来源：

FEMS MICROBIOLOGY LETTERS | 2004年 / 231卷 / 02期

关键词：

two-component; response regulator; genome sequence;

D O I：

10.1016/S0378-1097(04)00004-7

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The numbers of potential response regulator genes were determined from the complete and annotated genome sequences of Archaea and Bacteria. The numbers of each class of response regulators are shown for each organism, determined principally from BLASTP searches, but with reference to the gene category lists where available. The survey shows that for Bacteria there is a link between the total number of potential response regulator genes and both the genome complexity (number of potential protein-coding genes) and the organism's lifestyle/habitat. Increasingly complex lifestyles and genome complexities are matched by an increase in the average number of potential response regulator genes per genome, indicating that a higher degree of complexity requires a higher level of control of gene expression and cellular activity. Detailed results of this study are available online at http://www.mona.uwi.edu/biochem/courses/bc31m/ table2.xls and http://www.mona.uwi.edu/biochem/courses/bc31m/table2genelist.pdf. (C) 2004 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved.

引用

页码：277 / 281

页数：5

共 11 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].

Altschul, SF ;

Madden, TL ;

Schaffer, AA ;

Zhang, JH ;

Zhang, Z ;

Miller, W ;

Lipman, DJ .

NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402

[2] Comparative analysis of prototype two-component systems with either bifunctional or monofunctional sensors: differences in molecular structure and physiological function [J].

Alves, R ;

Savageau, MA .

MOLECULAR MICROBIOLOGY, 2003, 48 (01) :25-51

[3] Two-component signal transduction in Bacillus subtilis:: How one organism sees its world [J].

Fabret, C ;

Feher, VA ;

Hoch, JA .

JOURNAL OF BACTERIOLOGY, 1999, 181 (07) :1975-1983

[4]

Galperin MY, 2001, FEMS MICROBIOL LETT, V203, P11, DOI 10.1111/j.1574-6968.2001.tb10814.x

[5] Two-component and phosphorelay signal transduction [J].

Hoch, JA .

CURRENT OPINION IN MICROBIOLOGY, 2000, 3 (02) :165-170

[6] Genomic analysis of the histidine kinase family in bacteria and archaea [J].

Kim, D ;

Forst, S .

MICROBIOLOGY-SGM, 2001, 147 :1197-1212

[7] Evolution of two-component signal transduction [J].

Koretke, KK ;

Lupas, AN ;

Warren, PV ;

Rosenberg, M ;

Brown, JR .

MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (12) :1956-1970

[8]

Mizuno T, 1996, DNA Res, V3, P407, DOI 10.1093/dnares/3.6.407

[9]

Mizuno T, 1997, DNA Res, V4, P161, DOI 10.1093/dnares/4.2.161

[10] Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing Cyanobacterium anabaena sp strain PCC 7120 [J].

Ohmori, M ;

Ikeuchi, M ;

Sato, N ;

Wolk, P ;

Kaneko, T ;

Ogawa, T ;

Kanehisa, M ;

Goto, S ;

Kawashima, S ;

Okamoto, S ;

Yoshimura, H ;

Katoh, H ;

Fujisawa, T ;

Ehira, S ;

Kamei, A ;

Yoshihara, S ;

Narikawa, R ;

Tabata, S .

DNA RESEARCH, 2001, 8 (06) :271-284

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