IRILmap: linkage map distance correction for intermated recombinant inbred lines/advanced recombinant inbred strains

被引：15

作者：

Falque, M ^{[1
]}

机构：

[1] CNRS, INAPG, UMR Genet Vegetale, INRA,UPS, F-91190 Gif Sur Yvette, France

来源：

BIOINFORMATICS | 2005年 / 21卷 / 16期

关键词：

D O I：

10.1093/bioinformatics/bti543

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Intermated Recombinant Inbred Lines (IRILs) in plants, or Advanced Recombinant Inbred Strains in animals, are constructed by carrying out generations of intermating between F2 individuals before starting recurrent inbreeding generations by selfing or sib-mating. IRILs are powerful for high-resolution genetic mapping because they have undergone more recombination than usual Recombinant Inbred Lines (RILs). However, there is no mapping software able to generate actual centiMorgan distances from the segregation data obtained with IRILs. IRILmap software converts genetic distances computed with any linkage mapping program designed for RILs, so that IRIL-derived data can be used to get actual centiMorgan distances, directly comparable to F2, backcross or RIL-derived maps.

引用

页码：3441 / 3442

页数：2

共 11 条

[1]

Haldane JBS, 1931, GENETICS, V16, P0357

[2]

Haldane JBS, 1919, J GENET, V8, P299

[3] Fine mapping of trypanosomiasis resistance loci in murine advanced intercross lines [J].

Iraqi, F ;

Clapcott, SJ ;

Kumari, P ;

Haley, CS ;

Kemp, SJ ;

Teale, AJ .

MAMMALIAN GENOME, 2000, 11 (08) :645-648

[4]

Kosambi D. D., 1944, ANN EUGENICS, V12, P172

[5]

LANDER E S, 1987, Genomics, V1, P174, DOI 10.1016/0888-7543(87)90010-3

[6] Neural networks for Web content filtering [J].

Lee, PY ;

Hui, SC ;

Fong, ACM .

IEEE INTELLIGENT SYSTEMS, 2002, 17 (05) :48-57

[7]

Liu SC, 1996, GENETICS, V142, P247

[8] A new set of BXD recombinant inbred lines from advanced intercross populations in mice [J].

Peirce, JL ;

Lu, L ;

Gu, J ;

Silver, LM ;

Williams, RW .

BMC GENETICS, 2004, 5 (1)

[9] CONSTRUCTION OF INTEGRATED GENETIC-LINKAGE MAPS BY MEANS OF A NEW COMPUTER PACKAGE - JOINMAP [J].

STAM, P .

PLANT JOURNAL, 1993, 3 (05) :739-744

[10]

TEUSCHER F, 2005, GENETICS 0603

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