Blue moon sampling, vectorial reaction coordinates, and unbiased constrained dynamics

被引:142
作者
Ciccotti, G
Kapral, R
Vanden-Eijnden, E
机构
[1] NYU, Courant Inst, New York, NY 10012 USA
[2] Univ Roma La Sapienza, INFM, I-00185 Rome, Italy
[3] Univ Roma La Sapienza, Dipartimento Fis, I-00185 Rome, Italy
[4] Univ Toronto, Dept Chem, Chem Phys Theory Grp, Toronto, ON M5S 3H6, Canada
关键词
Blue Moon sampling; constrained stochastics dynamics; free energy; mean force; reaction coordinates;
D O I
10.1002/cphc.200400669
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We give a new formula expressing the components of the mean force in terms of a conditional expectation which can be computed by Blue Moon sampling. This generalizes to the vectorial case a formula first derived by Ruiz-Montero et al. [Mol. Phys. 1997, 90, 925] for a scalar reaction coordinate. We also discuss how to compute this conditional average by means of constrained stochastic dynamics which, unlike the usual constrained molecular dynamics, introduces no bias. Finally, we give a new perspective on bias removal by using constrained molecular dynamics.
引用
收藏
页码:1809 / 1814
页数:6
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