Empirical valence bond models for reactive potential energy surfaces: A parallel multilevel genetic program approach

被引:8
作者
Bellucci, Michael A. [1 ]
Coker, David F. [1 ,2 ,3 ]
机构
[1] Boston Univ, Dept Chem, Boston, MA 02215 USA
[2] CASL, Dublin 4, Ireland
[3] Univ Coll Dublin, Sch Phys, Dublin 4, Ireland
基金
美国国家科学基金会; 爱尔兰科学基金会;
关键词
ab initio calculations; chemical exchanges; chemistry computing; genetic algorithms; parameter space methods; potential energy surfaces; VB calculations; INTRAMOLECULAR PROTON-TRANSFER; MULTICONFIGURATION MOLECULAR-MECHANICS; EXCITED-STATE; CHEMICAL-REACTIONS; TRANSFER KINETICS; 3-HYDROXYFLAVONE; SPECTROSCOPY; ALGORITHM; TRANSPORT;
D O I
10.1063/1.3610907
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070305 [高分子化学与物理];
摘要
We describe a new method for constructing empirical valence bond potential energy surfaces using a parallel multilevel genetic program (PMLGP). Genetic programs can be used to perform an efficient search through function space and parameter space to find the best functions and sets of parameters that fit energies obtained by ab initio electronic structure calculations. Building on the traditional genetic program approach, the PMLGP utilizes a hierarchy of genetic programming on two different levels. The lower level genetic programs are used to optimize coevolving populations in parallel while the higher level genetic program (HLGP) is used to optimize the genetic operator probabilities of the lower level genetic programs. The HLGP allows the algorithm to dynamically learn the mutation or combination of mutations that most effectively increase the fitness of the populations, causing a significant increase in the algorithm's accuracy and efficiency. The algorithm's accuracy and efficiency is tested against a standard parallel genetic program with a variety of one-dimensional test cases. Subsequently, the PMLGP is utilized to obtain an accurate empirical valence bond model for proton transfer in 3-hydroxy-gamma-pyrone in gas phase and protic solvent. (C) 2011 American Institute of Physics. [doi:10.1063/1.3610907]
引用
收藏
页数:17
相关论文
共 60 条
[1]
Developing ab initio quality force fields from condensed phase quantum-mechanics/molecular-mechanics calculations through the adaptive force matching method [J].
Akin-Ojo, Omololu ;
Song, Yang ;
Wang, Feng .
JOURNAL OF CHEMICAL PHYSICS, 2008, 129 (06)
[2]
Molecular mechanics for chemical reactions: A standard strategy for using multiconfiguration molecular mechanics for variational transition state theory with optimized multidimensional tunneling [J].
Albu, TV ;
Corchado, JC ;
Truhlar, DG .
JOURNAL OF PHYSICAL CHEMISTRY A, 2001, 105 (37) :8465-8487
[3]
Ultrafast measurements of excited state intramolecular proton transfer (ESIPT) in room temperature solutions of 3-hydroxyflavone and derivatives [J].
Ameer-Beg, S ;
Ormson, SM ;
Brown, RG ;
Matousek, P ;
Towrie, M ;
Nibbering, ETJ ;
Foggi, P ;
Neuwahl, FVR .
JOURNAL OF PHYSICAL CHEMISTRY A, 2001, 105 (15) :3709-3718
[4]
[Anonymous], 1994, Genetic programming II: Automatic discovery of reusable programs, DOI DOI 10.5555/183460
[5]
[Anonymous], 2008, J CHEM PHYS
[6]
[Anonymous], 2003, Genetic programming IV: routine human-competitive machine intelligence
[7]
SIMULATION OF ENZYME-REACTIONS USING VALENCE-BOND FORCE-FIELDS AND OTHER HYBRID QUANTUM-CLASSICAL APPROACHES [J].
AQVIST, J ;
WARSHEL, A .
CHEMICAL REVIEWS, 1993, 93 (07) :2523-2544
[8]
Excited state and ground state proton transfer rates of 3-hydroxyflavone and its derivatives studied by shpol'skii spectroscopy: The influence of redistribution of electron density [J].
Bader, AN ;
Pivovarenko, VG ;
Demchenko, AP ;
Ariese, F ;
Gooijer, C .
JOURNAL OF PHYSICAL CHEMISTRY B, 2004, 108 (29) :10589-10595
[9]
Proton transfer in 3-hydroxyflavone studied by high-resolution 10 K laser-excited Shpol'skii spectroscopy [J].
Bader, AN ;
Ariese, F ;
Gooijer, C .
JOURNAL OF PHYSICAL CHEMISTRY A, 2002, 106 (12) :2844-2849
[10]
Baker J. E., 1987, Genetic Algorithms and their Applications: Proceedings of the Second International Conference on Genetic Algorithms, P14