Comparative phylogenomics of pathogenic bacteria by microarray analysis

被引:39
作者
Dorrell, N [1 ]
Hinchliffe, SJ [1 ]
Wren, BW [1 ]
机构
[1] Univ London London Sch Hyg & Trop Med, Dept Infect & Trop Dis, London WC1E 7HT, England
基金
英国生物技术与生命科学研究理事会; 英国医学研究理事会;
关键词
D O I
10.1016/j.mib.2005.08.012
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
DNA microarrays represent a powerful technology that enables whole-scale comparison of bacterial genomes. This, coupled with new methods to model DNA microarray data, is facilitating the development of robust comparative phylogenomics analyses. Such studies have dramatically increased our ability to differentiate between bacteria, highlighting previously undetected genetic differences and population structures and providing new insight into virulence and evolution of bacterial pathogens. Recent results from such studies have generated insights into the evolution of bacterial pathogens, the levels of diversity and plasticity in the genome of a species, as well as the differences in virulence amongst pathogenic bacteria.
引用
收藏
页码:620 / 626
页数:7
相关论文
共 42 条
[1]   Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis [J].
Achtman, M ;
Zurth, K ;
Morelli, C ;
Torrea, G ;
Guiyoule, A ;
Carniel, E .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (24) :14043-14048
[2]   Microevolution and history of the plague bacillus, Yersinia pestis [J].
Achtman, M ;
Morelli, G ;
Zhu, PX ;
Wirth, T ;
Diehl, I ;
Kusecek, B ;
Vogler, AJ ;
Wagner, DM ;
Allender, CJ ;
Easterday, WR ;
Chenal-Francisque, V ;
Worsham, P ;
Thomson, NR ;
Parkhill, J ;
Lindler, LE ;
Carniel, E ;
Keim, P .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (51) :17837-17842
[3]   Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori [J].
Alm, RA ;
Ling, LSL ;
Moir, DT ;
King, BL ;
Brown, ED ;
Doig, PC ;
Smith, DR ;
Noonan, B ;
Guild, BC ;
deJonge, BL ;
Carmel, G ;
Tummino, PJ ;
Caruso, A ;
Uria-Nickelsen, M ;
Mills, DM ;
Ives, C ;
Gibson, R ;
Merberg, D ;
Mills, SD ;
Jiang, Q ;
Taylor, DE ;
Vovis, GF ;
Trost, TJ .
NATURE, 1999, 397 (6715) :176-180
[4]   Comparative genomic indexing reveals the phylogenomics of Escherichia coli pathogens [J].
Anjum, MF ;
Lucchini, S ;
Thompson, A ;
Hinton, JCD ;
Woodward, MJ .
INFECTION AND IMMUNITY, 2003, 71 (08) :4674-4683
[5]   Comparative genomics of BCG vaccines by whole-genome DNA microarray [J].
Behr, MA ;
Wilson, MA ;
Gill, WP ;
Salamon, H ;
Schoolnik, GK ;
Rane, S ;
Small, PM .
SCIENCE, 1999, 284 (5419) :1520-1523
[6]   Genome-wide molecular dissection of serotype M3 group A Streptococcus strains causing two epidemics of invasive infections [J].
Beres, SB ;
Sylva, GL ;
Sturdevant, DE ;
Granville, CN ;
Liu, MY ;
Ricklefs, SM ;
Whitney, AR ;
Parkins, LD ;
Hoe, NP ;
Adams, GJ ;
Low, DE ;
DeLeo, FR ;
McGeer, A ;
Musser, JM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (32) :11833-11838
[7]   A new evolutionary scenario for the Mycobacterium tuberculosis complex [J].
Brosch, R ;
Gordon, SV ;
Marmiesse, M ;
Brodin, P ;
Buchrieser, C ;
Eiglmeier, K ;
Garnier, T ;
Gutierrez, C ;
Hewinson, G ;
Kremer, K ;
Parsons, LM ;
Pym, AS ;
Samper, S ;
van Soolingen, D ;
Cole, ST .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (06) :3684-3689
[8]   Comparative genomics of Staphylococcus aureus musculoskeletal isolates [J].
Cassat, JE ;
Dunman, PM ;
McAleese, F ;
Murphy, E ;
Projan, SJ ;
Smeltzer, MS .
JOURNAL OF BACTERIOLOGY, 2005, 187 (02) :576-592
[9]   Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S-enterica serovar Typhimurium DNA microarray [J].
Chan, K ;
Baker, S ;
Kim, CC ;
Detweiler, CS ;
Dougan, G ;
Falkow, S .
JOURNAL OF BACTERIOLOGY, 2003, 185 (02) :553-563
[10]   Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity [J].
Dorrell, N ;
Mangan, JA ;
Laing, KG ;
Hinds, J ;
Linton, D ;
Al-Ghusein, H ;
Barrell, BG ;
Parkhill, J ;
Stoker, NG ;
Karlyshev, AV ;
Butcher, PD ;
Wren, BW .
GENOME RESEARCH, 2001, 11 (10) :1706-1715