The EVA spectral descriptor

被引:37
作者
Turner, DB
Willett, P
机构
[1] Univ Sheffield, Dept Informat Studies, Sheffield S10 2TN, S Yorkshire, England
[2] Univ Sheffield, Krebs Inst Biomolec Res, Sheffield S10 2TN, S Yorkshire, England
基金
英国生物技术与生命科学研究理事会;
关键词
3-D QSAR; alignment-free; descriptor sampling; GA; IR; Raman vibration; PLS;
D O I
10.1016/S0223-5234(00)00141-0
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
The EVA descriptor is derived from fundamental IR and Raman range molecular vibrational frequencies. EVA is sensitive to 3-D structure, but has an advantage over field-based 3-D QSAR methods inasmuch as it is invariant to both translation and rotation of the structures concerned and thus structural superposition is not required. The latter property and the demonstration of the effectiveness of the descriptor for QSAR means that EVA has been the subject of a great deal of interest from the modelling community. This review describes the derivation of the descriptor, details its main parameters and how to apply them, and provides an overview of the validation that has been done with the descriptor. A recent enhancement to the technique is described which involves the localised adjustment of variance in such a way that enhanced internal and external predictability may be obtained. Despite the statistical quality of EVA QSAR models, the main draw-back to the descriptor at present is the difficulty associated with back-tracking from a PLS model to an EVA pharmacophore. Brief comment is made on the use of the EVA descriptor for diversity studies and the similarity searching of chemical structure databases. (C) 2000 Editions scientifiques et medicales Elsevier SAS.
引用
收藏
页码:367 / 375
页数:9
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