DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization

被引：43

作者：

Cannon, SB ^{[1
]}

Kozik, A

Chan, B

Michelmore, R

Young, ND

机构：

[1] Univ Minnesota, Dept Plant Biol, St Paul, MN 55108 USA

[2] Univ Calif Davis, Dept Vegetable Crops, Davis, CA 95616 USA

[3] Univ Minnesota, Dept Plant Pathol, St Paul, MN 55108 USA

来源：

GENOME BIOLOGY | 2003年 / 4卷 / 10期

基金：

美国国家科学基金会;

关键词：

D O I：

10.1186/gb-2003-4-10-r68

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

The DiagHunter and GenoPix2D applications work together to enable genomic comparisons and exploration at both genome-wide and single-gene scales. DiagHunter identifies homologous regions (synteny blocks) within or between genomes. DiagHunter works efficiently with diverse, large datasets to predict extended and interrupted synteny blocks and to generate graphical and text output quickly. GenoPix2D allows interactive display of synteny blocks and other genomic features, as well as querying by annotation and by sequence similarity.

引用

页数：8

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