GenBank

被引:147
作者
Sayers, Eric W. [1 ]
Cavanaugh, Mark [1 ]
Clark, Karen [1 ]
Pruitt, Ki M. D. [1 ]
Schoch, Conrad L. [1 ]
Sherry, Stephen T. [1 ]
Karsch-Mizrachi, Ilene [1 ]
机构
[1] NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bldg 38A,8600 Rockville Pike, Bethesda, MD 20894 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1093/nar/gkab1135
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
GenBank (R) (https://www.ncbi.nlm.nih.gov/genbank/) is a comprehensive, public database that contains 15.3 trillion base pairs from over 2.5 billion nucleotide sequences for 504 000 formally described species. Recent updates include resources for data from the SARS-CoV-2 virus, including a SARS-CoV-2 landing page, NCBI Datasets, NCBI Virus and the Submission Portal. We also discuss upcoming changes to GI identifiers, a new data management interface for BioProject, and advice for providing contextual metadata in submissions.
引用
收藏
页码:D161 / D164
页数:4
相关论文
共 9 条
[1]
BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata [J].
Barrett, Tanya ;
Clark, Karen ;
Gevorgyan, Robert ;
Gorelenkov, Vyacheslav ;
Gribov, Eugene ;
Karsch-Mizrachi, Ilene ;
Kimelman, Michael ;
Pruitt, Kim D. ;
Resenchuk, Sergei ;
Tatusova, Tatiana ;
Yaschenko, Eugene ;
Ostell, James .
NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D57-D63
[2]
BLAST: a more efficient report with usability improvements [J].
Boratyn, Grzegorz M. ;
Camacho, Christiam ;
Cooper, Peter S. ;
Coulouris, George ;
Fong, Amelia ;
Ma, Ning ;
Madden, Thomas L. ;
Matten, Wayne T. ;
McGinnis, Scott D. ;
Merezhuk, Yuri ;
Raytselis, Yan ;
Sayers, Eric W. ;
Tao, Tao ;
Ye, Jian ;
Zaretskaya, Irena .
NUCLEIC ACIDS RESEARCH, 2013, 41 (W1) :W29-W33
[3]
NCBI Viral Genomes Resource [J].
Brister, J. Rodney ;
Ako-adjei, Danso ;
Bao, Yiming ;
Blinkova, Olga .
NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) :D571-D577
[4]
Integrating Biodiversity Infrastructure into Pathogen Discovery and Mitigation of Emerging Infectious Diseases [J].
Cook, Joseph A. ;
Arai, Satoru ;
Armien, Blas ;
Bates, John ;
Carrion Bonilla, Carlos A. ;
de Souza Cortez, Maria Beatriz ;
Dunnum, Jonathan L. ;
Ferguson, Adam W. ;
Johnson, Karl M. ;
Khan, Faisal Ali Anwarali ;
Paul, Deborah L. ;
Reeder, DeeAnn M. ;
Revelez, Marcia A. ;
Simmons, Nancy B. ;
Thiers, Barbara M. ;
Thompson, Cody W. ;
Upham, Nathan S. ;
Vanhove, Maarten P. M. ;
Webala, Paul W. ;
Weksler, Marcelo ;
Yanagihara, Richard ;
Soltis, Pamela S. .
BIOSCIENCE, 2020, 70 (07) :531-534
[5]
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation [J].
O'Leary, Nuala A. ;
Wright, Mathew W. ;
Brister, J. Rodney ;
Ciufo, Stacy ;
McVeigh, Diana Haddad Rich ;
Rajput, Bhanu ;
Robbertse, Barbara ;
Smith-White, Brian ;
Ako-Adjei, Danso ;
Astashyn, Alexander ;
Badretdin, Azat ;
Bao, Yiming ;
Blinkova, Olga ;
Brover, Vyacheslav ;
Chetvernin, Vyacheslav ;
Choi, Jinna ;
Cox, Eric ;
Ermolaeva, Olga ;
Farrell, Catherine M. ;
Goldfarb, Tamara ;
Gupta, Tripti ;
Haft, Daniel ;
Hatcher, Eneida ;
Hlavina, Wratko ;
Joardar, Vinita S. ;
Kodali, Vamsi K. ;
Li, Wenjun ;
Maglott, Donna ;
Masterson, Patrick ;
McGarvey, Kelly M. ;
Murphy, Michael R. ;
O'Neill, Kathleen ;
Pujar, Shashikant ;
Rangwala, Sanjida H. ;
Rausch, Daniel ;
Riddick, Lillian D. ;
Schoch, Conrad ;
Shkeda, Andrei ;
Storz, Susan S. ;
Sun, Hanzhen ;
Thibaud-Nissen, Francoise ;
Tolstoy, Igor ;
Tully, Raymond E. ;
Vatsan, Anjana R. ;
Wallin, Craig ;
Webb, David ;
Wu, Wendy ;
Landrum, Melissa J. ;
Kimchi, Avi ;
Tatusova, Tatiana .
NUCLEIC ACIDS RESEARCH, 2016, 44 (D1) :D733-D745
[6]
GenBank [J].
Sayers, Eric W. ;
Cavanaugh, Mark ;
Clark, Karen ;
Pruitt, Kim D. ;
Schoch, Conrad L. ;
Sherry, Stephen T. ;
Karsch-Mizrachi, Ilene .
NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) :D92-D96
[7]
VADR: validation and annotation of virus sequence submissions to GenBank [J].
Schaffer, Alejandro A. ;
Hatcher, Eneida L. ;
Yankie, Linda ;
Shonkwiler, Lara ;
Brister, J. Rodney ;
Karsch-Mizrachi, Ilene ;
Nawrocki, Eric P. .
BMC BIOINFORMATICS, 2020, 21 (01)
[8]
The NCBI BioCollections Database [J].
Sharma, Shobha ;
Ciufo, Stacy ;
Starchenko, Elena ;
Darji, Dakshesh ;
Chlumsky, Larry ;
Karsch-Mizrachi, Ilene ;
Schoch, Conrad L. .
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2018,
[9]
Darwin Core: An Evolving Community-Developed Biodiversity Data Standard [J].
Wieczorek, John ;
Bloom, David ;
Guralnick, Robert ;
Blum, Stan ;
Doring, Markus ;
Giovanni, Renato ;
Robertson, Tim ;
Vieglais, David .
PLOS ONE, 2012, 7 (01)