Intron length and codon usage

被引:51
作者
Vinogradov, AE [1 ]
机构
[1] Russian Acad Sci, Inst Cytol, St Petersburg 194064, Russia
关键词
genome evolution; noncoding DNA; junk DNA; intervening sequence; codon usage; codon bias; gene expression; unicellular; multicellular; Baker's yeast;
D O I
10.1007/s002390010128
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The correlation was shown between the length of introns and the codon usage of the coding sequences of the corresponding genes, which in some cases can be related to the level of gene expression. The link is positive in the unicellular organisms, i.e., genes with the longer introns show the higher bias of codon usage. It is most pronounced in baker's yeast, where it is definitely related to the level of gene expression-genes with the higher level of expression have the longer introns, The correlation is inverted in multicellular organisms as compared to unicellular ones. Some organisms, however, do not show the link. The presence or absence of the link does not seem to be related to the GC percent of the coding sequences.
引用
收藏
页码:2 / 5
页数:4
相关论文
共 29 条
[1]   Synonymous and nonsynonymous substitutions in mammalian genes: Intragenic correlations [J].
Alvarez-Valin, F ;
Jabbari, K ;
Bernardi, G .
JOURNAL OF MOLECULAR EVOLUTION, 1998, 46 (01) :37-44
[2]   Synonymous and nonsynonymous substitutions in genes from Gramineae:: Intragenic correlations [J].
Alvarez-Valin, F ;
Jabbari, K ;
Carels, N ;
Bernardi, G .
JOURNAL OF MOLECULAR EVOLUTION, 1999, 49 (03) :330-342
[3]   AUTOREGULATION OF EXPRESSION OF THE YEAST DBP2P DEAD-BOX PROTEIN IS MEDIATED BY SEQUENCES IN THE CONSERVED DBP2 INTRON [J].
BARTA, I ;
IGGO, R .
EMBO JOURNAL, 1995, 14 (15) :3800-3808
[4]  
BENNETZEN JL, 1982, J BIOL CHEM, V257, P3026
[5]   Transcriptional regulatory sequences within the first intron of the chicken apolipoproteinAI (apoAI) gene [J].
Bhattacharyya, N ;
Banerjee, D .
GENE, 1999, 234 (02) :371-380
[6]   In vivo identification of nuclear factors interacting with the conserved elements of box C/D small nucleolar RNAs [J].
Caffarelli, E ;
Losito, M ;
Giorgi, C ;
Fatica, A ;
Bozzoni, I .
MOLECULAR AND CELLULAR BIOLOGY, 1998, 18 (02) :1023-1028
[7]   Codon usage and gene function are related in sequences of Arabidopsis thaliana (Reprinted from Gene Combis, vol 209, pg GC1-GC38, 1998) [J].
Chiapello, H ;
Lisacek, F ;
Caboche, M ;
Hénaut, A .
GENE, 1998, 209 (1-2) :GC1-GC38
[8]   Toward a resolution of the introns early/late debate: Only phase zero introns are correlated with the structure of ancient proteins [J].
De Souza, SJ ;
Long, M ;
Kleln, RJ ;
Roy, S ;
Lin, S ;
Gilbert, W .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (09) :5094-5099
[9]   STATISTICAL-ANALYSIS OF VERTEBRATE SEQUENCES REVEALS THAT LONG GENES ARE SCARCE IN GC-RICH ISOCHORES [J].
DURET, L ;
MOUCHIROUD, D ;
GAUTIER, C .
JOURNAL OF MOLECULAR EVOLUTION, 1995, 40 (03) :308-317
[10]   The gene-richest bands of human chromosomes replicate at the onset of the S-phase [J].
Federico, C ;
Saccone, S ;
Bernardi, G .
CYTOGENETICS AND CELL GENETICS, 1998, 80 (1-4) :83-88