Evidence for Network Evolution in an Arabidopsis Interactome Map

被引：754

作者：

Braun, Pascal

Carvunis, Anne-Ruxandra ^{[1
,2
,3
,4
,5
]}

Charloteaux, Benoit ^{[1
,6
,7
]}

Dreze, Matija ^{[8
]}

Ecker, Joseph R. ^{[9
,10
]}

Hill, David E.

Roth, Frederick P.

Vidal, Marc

Galli, Mary

Balumuri, Padmavathi ^{[11
,12
]}

Bautista, Vanessa

Chesnut, Jonathan D. ^{[11
,12
]}

Kim, Rosa Cheuk

de los Reyes, Chris ^{[9
]}

Gilles, Patrick, II ^{[11
,12
]}

Kim, Christopher J. ^{[9
]}

Matrubutham, Uday ^{[11
,12
]}

Mirchandani, Jyotika ^{[11
,12
]}

Olivares, Eric ^{[11
,12
]}

Patnaik, Suswapna ^{[11
,12
]}

Quan, Rosa

Ramaswamy, Gopalakrishna ^{[11
,12
]}

Shinn, Paul

Swamilingiah, Geetha M. ^{[11
,12
]}

Wu, Stacy

Ecker, Joseph R. ^{[9
,10
]}

Dreze, Matija ^{[8
]}

Byrdsong, Danielle

Dricot, Amelie ^{[1
,2
,3
]}

Duarte, Melissa

Gebreab, Fana

Gutierrez, Bryan J. ^{[1
]}

MacWilliams, Andrew ^{[1
,2
,3
]}

Monachello, Dario ^{[15
]}

Mukhtar, M. Shahid ^{[14
]}

Poulin, Matthew M.

Reichert, Patrick

Romero, Viviana

Tam, Stanley

Waaijers, Selma

Weiner, Evan M.

Vidal, Marc

Hill, David E.

Braun, Pascal

Galli, Mary

Carvunis, Anne-Ruxandra ^{[1
,2
,3
,4
,5
]}

Cusick, Michael E.

Dreze, Matija ^{[8
]}

Romero, Viviana

Roth, Frederick P.

机构：

[1] Dana Farber Canc Inst, Ctr Canc Syst Biol CCSB, Boston, MA 02215 USA

[2] Dana Farber Canc Inst, Dept Canc Biol, Boston, MA 02215 USA

[3] Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USA

[4] CNRS, Computat & Math Biol Grp, UMR5525, F-38706 La Tronche, France

[5] Univ Grenoble, Fac Med, F-38706 La Tronche, France

[6] Univ Liege, GIGA R, Unit Anim Genom, B-4000 Liege, Wallonia Brusse, Belgium

[7] Univ Liege, Fac Vet Med, B-4000 Liege, Wallonia Brusse, Belgium

[8] Fac Univ Notre Dame Paix, Unite Rech Biol Mol, B-5000 Namur, Wallonia Brusse, Belgium

[9] Salk Inst Biol Studies, Genom Anal Lab, La Jolla, CA 92037 USA

[10] Salk Inst Biol Studies, Plant Biol Lab, La Jolla, CA 92037 USA

[11] Harvard Univ, Sch Med, Dept Biol Chem, Boston, MA 02115 USA

[12] Harvard Univ, Sch Med, Dept Mol Pharmacol, Boston, MA 02115 USA

[13] Northeastern Univ, Dept Phys, Ctr Complex Network Res CCNR, Boston, MA 02115 USA

[14] Univ N Carolina, Dept Biol, Chapel Hill, NC 27599 USA

[15] Univ Evry Val Essonne, Unite Rech Genom Vegetale, Inst Natl Rech Agron, Unite Mixtes Rech,ERL Ctr Natl Rech Sci, F-91057 Evry, France

[16] Univ Notre Dame, Dept Comp Sci & Engn, Notre Dame, IN 46556 USA

[17] Univ Warwick, Warwick Syst Biol Ctr, Coventry CV4 7AL, W Midlands, England

[18] Boston Univ, Dept Biomed Engn, Boston, MA 02215 USA

[19] Boston Univ, Sch Med, Boston, MA 02118 USA

[20] Univ London Imperial Coll Sci Technol & Med, Dept Comp, London SW7 2AZ, England

[21] Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA

[22] Eagle Genom Ltd, Cambridge CB4 1JD, England

[23] Cornell Univ, USDA, ARS, Robert W Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA

来源：

SCIENCE | 2011年 / 333卷 / 6042期

基金：

美国国家科学基金会; 英国生物技术与生命科学研究理事会;

关键词：

PROTEIN-INTERACTION NETWORKS; DUPLICATED GENES; GENOME; DIVERGENCE; EXPRESSION; PLASTICITY; BINDING; EVOLVES; PLANTS; FATE;

D O I：

10.1126/science.1203877

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

070301 [无机化学]; 070403 [天体物理学]; 070507 [自然资源与国土空间规划学]; 090105 [作物生产系统与生态工程];

摘要：

Plants have unique features that evolved in response to their environments and ecosystems. A full account of the complex cellular networks that underlie plant-specific functions is still missing. We describe a proteome-wide binary protein-protein interaction map for the interactome network of the plant Arabidopsis thaliana containing about 6200 highly reliable interactions between about 2700 proteins. A global organization of plant biological processes emerges from community analyses of the resulting network, together with large numbers of novel hypothetical functional links between proteins and pathways. We observe a dynamic rewiring of interactions following gene duplication events, providing evidence for a model of evolution acting upon interactome networks. This and future plant interactome maps should facilitate systems approaches to better understand plant biology and improve crops.

引用

页码：601 / 607

页数：7

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