Novel reaction mechanism of GTP cyclohydrolase I.: High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative

被引:31
作者
Tanaka, Y
Nakagawa, N
Kuramitsu, S
Yokoyama, S
Masui, R
机构
[1] Osaka Univ, Dept Biol, Grad Sch Sci, Toyonaka, Osaka 5600043, Japan
[2] RIKEN, Harima Inst, Mikazukai, Hyogo 6795148, Japan
[3] RIKEN, Genomic Sci Ctr, Yokohama, Kanagawa 2300045, Japan
[4] Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130033, Japan
关键词
GTP cyclohydrolase I; 8-oxoguanine; Thermus thermophilus HB8; transition state analogue; zinc enzyme;
D O I
10.1093/jb/mvi120
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
GTP cyclohydrolase I (GTPCH1) catalyzes the conversion of GTP to dihydroneopterin 3 '-triphosphate. We found that an 8-oxoguanine derivative of GTP (8-oxo-GTP) strongly bound to GTPCH1 from Thermus thermophilus HB8 (tGTPCH1) as a competitive inhibitor. The affinity of 8-oxo-GTP was three orders of magnitude greater than that of GTP These results suggest that 8-oxo-GTP is a transition state analogue of GTPCH1. We have solved the X-ray crystal structures of tGTPCH1 complexed with 8oxo-GTP and 8-oxo-dGTP at 2.0 and 1.8 A resolution, respectively, as well as the free form of the enzyme at 2.2 A resolution. In the structure of tGTPCH1 complexed with 8oxo-GTP or 8-oxo-dGTP, the oxygen atoms at O8 of the 8-oxoguanine groups, together with residues Cys108, His111 and Cys179, are coordinated to the zinc ion. The water molecule between N delta 1 of His177 and N7 of 8-oxoguanine is conserved in both structures. These structural data are in accordance with one of the proposed transition states. Superimpositioning of the structures indicates the imidazole ring of His110 is rotated, implying concomitant proton transfer to the ribose ring 04 '. Based on these structural data we propose a novel reaction mechanism for GTPCH1.
引用
收藏
页码:263 / 275
页数:13
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