Two-state protein model with water interactions: Influence of temperature on the intrinsic viscosity of myoglobin

被引:9
作者
Bakk, A [1 ]
机构
[1] Norwegian Univ Sci & Technol, NTNU, Dept Phys, NO-7491 Trondheim, Norway
来源
PHYSICAL REVIEW E | 2001年 / 63卷 / 06期
关键词
D O I
10.1103/PhysRevE.63.061906
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We describe a single-domain protein as a two-state system with water interactions. Around the unfolded apolar parts of the protein we incorporate the hydration effect by introducing hydrogen bonds between the water molecules in order to mimic the ''icelike'' shell structure. Intrinsic viscosity, proportional to the effective hydrodynamic volume, for sperm whale metmyoglobin is assigned from experimental data in the folded and in the denaturated state. By weighing statistically the two states against the degree of folding, we express the total intrinsic viscosity. The temperature dependence of the intrinsic viscosity, for different chemical potentials, is in good correspondence with experimental data [P. L. Privalov er al., J. Mel. Biol. 190, 487 (1986)]. Cold and warm unfolding, common to small globular proteins, is also a result of the model.
引用
收藏
页数:5
相关论文
共 42 条
[1]   INFLUENCE OF TEMPERATURE ON INTRINSIC VISCOSITIES OF PROTEINS IN RANDOM COIL CONFORMATION [J].
AHMAD, F ;
SALAHUDDIN, A .
BIOCHEMISTRY, 1974, 13 (02) :245-249
[2]   Pathways in two-state protein folding [J].
Bakk, A ;
Hoye, JS ;
Hansen, A ;
Sneppen, K ;
Jensen, MH .
BIOPHYSICAL JOURNAL, 2000, 79 (05) :2722-2727
[3]   Protein model exhibiting three folding transitions [J].
Bakk, A ;
Hansen, A ;
Sneppen, K .
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2001, 291 (1-4) :60-70
[4]  
BAKK A, UNPUB
[5]  
BIRD RB, 1987, DYNAMICS POLYM LIQUI, V2, P105
[7]   CONFIGURATION OF RANDOM POLYPEPTIDE CHAINS .2. THEORY [J].
BRANT, DA ;
FLORY, PJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1965, 87 (13) :2791-&
[8]   A SIMPLE STATISTICAL FIELD-THEORY OF HETEROPOLYMER COLLAPSE WITH APPLICATION TO PROTEIN FOLDING [J].
BRYNGELSON, JD ;
WOLYNES, PG .
BIOPOLYMERS, 1990, 30 (1-2) :177-188
[9]   SPIN-GLASSES AND THE STATISTICAL-MECHANICS OF PROTEIN FOLDING [J].
BRYNGELSON, JD ;
WOLYNES, PG .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1987, 84 (21) :7524-7528
[10]  
CANTOR CR, 1980, BIOPHYSICAL CHEM, V2, P648