A note on N-body computations with cutoffs

被引:37
作者
Snir, M [1 ]
机构
[1] Univ Illinois, Dept Comp Sci, Urbana, IL 61801 USA
关键词
D O I
10.1007/s00224-003-1071-0
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
We provide a theoretical analysis of the communication requirements of parallel algorithms for molecular dynamic simulations. We describe two commonly used algorithms, space decomposition and force decomposition, and analyze their communication requirements; each is better in a distinct computation regime. We next introduce a new hybrid algorithm that further reduces communication. We show that the new algorithm is optimal, by providing a matching lower bound.
引用
收藏
页码:295 / 318
页数:24
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