Theoretical Study of the Chemoselectivity of Tungsten-Dependent Acetylene Hydratase

被引:32
作者
Liao, Rong-Zhen [1 ]
Himo, Fahmi [1 ]
机构
[1] Stockholm Univ, Arrhenius Lab, Dept Organ Chem, SE-10691 Stockholm, Sweden
来源
ACS CATALYSIS | 2011年 / 1卷 / 08期
基金
瑞典研究理事会;
关键词
acetylene hydratase; enzyme mechanism; chemoselectivity; transition state; density functional theory; PELOBACTER-ACETYLENICUS; NUCLEOPHILIC-ADDITION; MOLECULAR-ENERGIES; WACKER PROCESS; MECHANISM; ETHYLENE; REACTIVITY; MODELS; DISTORTION/INTERACTION; TUNGSTOENZYME;
D O I
10.1021/cs200242m
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The tungsten-dependent enzyme acetylene hydratase catalyzes the hydration of acetylene to acetaldehyde. Very recently, we proposed a reaction mechanism for this enzyme based on density functional calculations (Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 22523). The mechanism involves direct coordination of the substrate to the tungsten ion, followed by a nucleophilic attack by a water molecule concerted with a proton transfer to a second-shell aspartate, which then reprotonates the substrate. Here, we use the same methodology to investigate the factors involved in the control of the chemoselectivity of this enzyme. The hydration reactions of three representative compounds (propyne, ethylene, and acetonitrile) are investigated using a large model of the active site. The energy of substrate binding to the metal ion and the barrier for the following nucleophilic attack are used to rationalize the experimental observations. It is shown that all three compounds have higher barriers for hydration compared with acetylene. In addition, propyne is shown to have a larger binding energy, explaining its behavior as a competitive inhibitor. Taken together, the results provide further corroboration of our suggested mechanism for acetylene hydratase.
引用
收藏
页码:937 / 944
页数:8
相关论文
共 49 条
[1]   Experimental and Computational Studies of Binding of Dinitrogen, Nitriles, Azides, Diazoalkanes, Pyridine, and Pyrazines to M(PR3)2(CO)3 (M = Mo, W; R = Me, iPr) [J].
Achord, Patrick ;
Fujita, Etsuko ;
Muckerman, James T. ;
Scott, Brian ;
Fortman, George C. ;
Temprado, Manuel ;
Cai, Xiaochen ;
Captain, Burjor ;
Isrow, Derek ;
Weir, John J. ;
McDonough, James Eric ;
Hoff, Carl D. .
INORGANIC CHEMISTRY, 2009, 48 (16) :7891-7904
[2]   Copper-Catalyzed Phosphinidene Transfer to Ethylene, Acetylene, and Carbon Monoxide: A Computational Study [J].
Amme, Matthew J. ;
Kazi, Abul B. ;
Cundari, Thomas R. .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2010, 110 (09) :1702-1711
[3]   INCORPORATION OF SOLVENT EFFECTS INTO DENSITY-FUNCTIONAL CALCULATIONS OF MOLECULAR-ENERGIES AND GEOMETRIES [J].
ANDZELM, J ;
KOLMEL, C ;
KLAMT, A .
JOURNAL OF CHEMICAL PHYSICS, 1995, 103 (21) :9312-9320
[4]   Theoretical Studies of Models of the Active Site of the Tungstoenzyme Acetylene Hydratase [J].
Antony, Sonia ;
Bayse, Craig A. .
ORGANOMETALLICS, 2009, 28 (17) :4938-4944
[5]   Quantum calculation of molecular energies and energy gradients in solution by a conductor solvent model [J].
Barone, V ;
Cossi, M .
JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (11) :1995-2001
[6]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[7]   Low temperature rate coefficients for reactions of the butadiynyl radical, C4H, with various hydrocarbons. Part II: reactions with alkenes (ethylene, propene, 1-butene), dienes (allene, 1,3-butadiene) and alkynes (acetylene, propyne and 1-butyne) [J].
Berteloite, Coralie ;
Le Picard, Sebastien D. ;
Balucani, Nadia ;
Canosa, Andre ;
Sims, Ian R. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2010, 12 (15) :3677-3689
[8]   Mechanism and kinetics of the wacker process: A quantum mechanical approach [J].
Beyramabadi, S. Ali ;
Eshtiagh-Hosseini, Hossein ;
Housaindokht, Mohammad R. ;
Morsali, Ali .
ORGANOMETALLICS, 2008, 27 (01) :72-79
[9]   PURIFICATION AND PROPERTIES OF THE COENZYME A-LINKED ACETALDEHYDE DEHYDROGENASE OF ACETOBACTERIUM-WOODII [J].
BUSCHHORN, H ;
DURRE, P ;
GOTTSCHALK, G .
ARCHIVES OF MICROBIOLOGY, 1992, 158 (02) :132-138
[10]   The Wacker Process: Inner- or Outer-Sphere Nucleophilic Addition? New Insights from Ab Initio Molecular Dynamics [J].
Comas-Vives, Aleix ;
Stirling, Andras ;
Lledos, Agusti ;
Ujaque, Gregori .
CHEMISTRY-A EUROPEAN JOURNAL, 2010, 16 (29) :8738-8747