Helix Unwinding and Base Flipping Enable Human MTERF1 to Terminate Mitochondrial Transcription

被引:90
作者
Yakubovskaya, Elena [1 ]
Mejia, Edison [1 ]
Byrnes, James [1 ]
Hambardjieva, Elena [1 ]
Garcia-Diaz, Miguel [1 ]
机构
[1] SUNY Stony Brook, Dept Pharmacol Sci, BST 7-169, Stony Brook, NY 11794 USA
基金
美国国家卫生研究院;
关键词
MAMMALIAN MITOCHONDRIA; MTDNA TRANSCRIPTION; CRYSTAL-STRUCTURE; POINT MUTATION; NUCLEIC-ACIDS; RIBOSOMAL-RNA; DNA; PROTEIN; BIOGENESIS; FAMILY;
D O I
10.1016/j.cell.2010.05.018
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Defects in mitochondrial gene expression are associated with aging and disease. Mterf proteins have been implicated in modulating transcription, replication and protein synthesis. We have solved the structure of a member of this family, the human mitochondrial transcriptional terminator MTERF1, bound to dsDNA containing the termination sequence. The structure indicates that upon sequence recognition MTERF1 unwinds the DNA molecule, promoting eversion of three nucleotides. Base flipping is critical for stable binding and transcriptional termination. Additional structural and biochemical results provide insight into the DNA binding mechanism and explain how MTERF1 recognizes its target sequence. Finally, we have demonstrated that the mitochondrial pathogenic G3249A and G3244A mutations interfere with key interactions for sequence recognition, eliminating termination. Our results provide insight into the role of mterf proteins and suggest a link between mitochondrial disease and the regulation of mitochondrial transcription.
引用
收藏
页码:982 / 993
页数:12
相关论文
共 40 条
[1]   SEQUENCE AND ORGANIZATION OF THE HUMAN MITOCHONDRIAL GENOME [J].
ANDERSON, S ;
BANKIER, AT ;
BARRELL, BG ;
DEBRUIJN, MHL ;
COULSON, AR ;
DROUIN, J ;
EPERON, IC ;
NIERLICH, DP ;
ROE, BA ;
SANGER, F ;
SCHREIER, PH ;
SMITH, AJH ;
STADEN, R ;
YOUNG, IG .
NATURE, 1981, 290 (5806) :457-465
[2]   Mitochondrial transcription and its regulation in mammalian cells [J].
Asin-Cayuela, Jordi ;
Gustafsson, Claes M. .
TRENDS IN BIOCHEMICAL SCIENCES, 2007, 32 (03) :111-117
[3]   MolProbity: all-atom contacts and structure validation for proteins and nucleic acids [J].
Davis, Ian W. ;
Leaver-Fay, Andrew ;
Chen, Vincent B. ;
Block, Jeremy N. ;
Kapral, Gary J. ;
Wang, Xueyi ;
Murray, Laura W. ;
Arendall, W. Bryan, III ;
Snoeyink, Jack ;
Richardson, Jane S. ;
Richardson, David C. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :W375-W383
[4]   Coot:: model-building tools for molecular graphics [J].
Emsley, P ;
Cowtan, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2126-2132
[5]   The human mitochondrial transcription termination factor (mTERF) is a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions [J].
FernandezSilva, P ;
MartinezAzorin, F ;
Micol, V ;
Attardi, G .
EMBO JOURNAL, 1997, 16 (05) :1066-1079
[6]  
FORTELLE EDL, 1997, METHODS ENZYMOLOGY, V276
[7]   The transcription machinery in mammalian mitochondria [J].
Gaspari, M ;
Larsson, NG ;
Gustafsson, CM .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2004, 1659 (2-3) :148-152
[8]   Topological characteristics of helical repeat proteins [J].
Groves, MR ;
Barford, D .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1999, 9 (03) :383-389
[9]  
HENDRICKSON WA, 1997, METHODS ENZYMOLOGY, V276
[10]   IMPAIRMENT OF MITOCHONDRIAL TRANSCRIPTION TERMINATION BY A POINT MUTATION ASSOCIATED WITH THE MELAS SUBGROUP OF MITOCHONDRIAL ENCEPHALOMYOPATHIES [J].
HESS, JF ;
PARISI, MA ;
BENNETT, JL ;
CLAYTON, DA .
NATURE, 1991, 351 (6323) :236-239