Replication and transcription: Shaping the landscape of the genome

被引:147
作者
Chakalova, L [1 ]
Debrand, E [1 ]
Mitchell, JA [1 ]
Osborne, CS [1 ]
Fraser, P [1 ]
机构
[1] Babraham Inst, Lab Chromatin & Gene Express, Cambridge CB2 4AT, England
基金
英国生物技术与生命科学研究理事会;
关键词
D O I
10.1038/nrg1673
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
As the relationship between nuclear structure and function begins to unfold, a picture is emerging of a dynamic landscape that is centred on the two main processes that execute the regulated use and propagation of the genome. Rather than being subservient enzymatic activities, the replication and transcriptional machineries provide potent forces that organize the genome in three-dimensional nuclear space, Their activities provide opportunities for epigenetic changes that are required for differentiation and development. In addition, they impose physical constraints on the genome that might help to shape its evolution.
引用
收藏
页码:669 / 677
页数:9
相关论文
共 131 条
[1]   Chromatin dynamics in interphase nuclei and its implications for nuclear structure [J].
Abney, JR ;
Cutler, B ;
Fillbach, ML ;
Axelrod, D ;
Scalettar, BA .
JOURNAL OF CELL BIOLOGY, 1997, 137 (07) :1459-1468
[2]   The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly [J].
Ahmad, K ;
Henikoff, S .
MOLECULAR CELL, 2002, 9 (06) :1191-1200
[3]   Intergenic transcription and transinduction of the human beta-globin locus [J].
Ashe, HL ;
Monks, J ;
Wijgerde, M ;
Fraser, P ;
Proudfoot, NJ .
GENES & DEVELOPMENT, 1997, 11 (19) :2494-2509
[4]   Heritable gene silencing in lymphocytes delays chromatid resolution without affecting the timing of DNA replication [J].
Azuara, V ;
Brown, KE ;
Williams, RRE ;
Webb, N ;
Dillon, N ;
Festenstein, R ;
Buckle, V ;
Merkenschlager, M ;
Fisher, AG .
NATURE CELL BIOLOGY, 2003, 5 (07) :668-U49
[5]   Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex [J].
Bae, E ;
Calhoun, VC ;
Levine, M ;
Lewis, EB ;
Drewell, RA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (26) :16847-16852
[6]   FACT facilitates transcription-dependent nucleosome alteration [J].
Belotserkovskaya, R ;
Oh, S ;
Bondarenko, VA ;
Orphanides, G ;
Studitsky, VM ;
Reinberg, D .
SCIENCE, 2003, 301 (5636) :1090-1093
[7]   Genomic analysis of Drosophila chromosome underreplication reveals a link between replication control and transcriptional territories [J].
Belyakin, SN ;
Christophides, GK ;
Alekseyenko, AA ;
Kriventseva, EV ;
Belyaeva, ES ;
Nanayev, RA ;
Makunin, IV ;
Kafatos, FC ;
Zhimulev, IF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (23) :8269-8274
[8]  
Bender W, 2002, DEVELOPMENT, V129, P4923
[9]   Genomic maps and comparative analysis of histone modifications in human and mouse [J].
Bernstein, BE ;
Kamal, M ;
Lindblad-Toh, K ;
Bekiranov, S ;
Bailey, DK ;
Huebert, DJ ;
McMahon, S ;
Karlsson, EK ;
Kulbokas, EJ ;
Gingeras, TR ;
Schreiber, SL ;
Lander, ES .
CELL, 2005, 120 (02) :169-181
[10]   Protein:protein interactions and the pairing of boundary elements in vivo [J].
Blanton, J ;
Gaszner, M ;
Schedl, P .
GENES & DEVELOPMENT, 2003, 17 (05) :664-675