Post-transcriptional control of gene expression:: a genome-wide perspective

被引:208
作者
Mata, J [1 ]
Marguerat, S [1 ]
Bähler, A [1 ]
机构
[1] Wellcome Trust Sanger Inst, Canc Res UK Fiss Yeast Funct Genom Grp, Cambridge CB10 1SA, England
基金
英国惠康基金;
关键词
D O I
10.1016/j.tibs.2005.07.005
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Gene expression is regulated at multiple levels, and cells need to integrate and coordinate different layers of control to implement the information in the genome. Post-transcriptional levels of regulation such a's transcript turnover and translational control are an,integral part of gene expression and might rival the sophistication and importance of transcriptional control. Microarray-based methods are increasingly used to study not only transcription but also global patterns of transcript decay and translation rates in addition to comprehensively identify targets of RNA-binding proteins. Such large-scale analyses have recently provided supplementary and unique insights into gene expression programs. Integration of several different datasets will ultimately lead to a system-wide understanding of the varied and complex mechanisms for gene expression control.
引用
收藏
页码:506 / 514
页数:9
相关论文
共 70 条
[1]   Dissecting eukaryotic translation and its control by ribosome density mapping [J].
Arava, Y ;
Boas, FE ;
Brown, PO ;
Herschlag, D .
NUCLEIC ACIDS RESEARCH, 2005, 33 (08) :2421-2432
[2]   Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae [J].
Arava, Y ;
Wang, YL ;
Storey, JD ;
Liu, CL ;
Brown, PO ;
Herschlag, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (07) :3889-3894
[3]   Targeted mRNA degradation by deadenylation-independent decapping [J].
Badis, G ;
Saveanu, C ;
Fromont-Racine, M ;
Jacquier, A .
MOLECULAR CELL, 2004, 15 (01) :5-15
[4]  
Beilharz Traude H., 2004, Briefings in Functional Genomics & Proteomics, V3, P103, DOI 10.1093/bfgp/3.2.103
[5]   Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays [J].
Bernstein, JA ;
Khodursky, AB ;
Lin, PH ;
Lin-Chao, S ;
Cohen, SN .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (15) :9697-9702
[6]   Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale [J].
Beyer, A ;
Hollunder, J ;
Nasheuer, HP ;
Wilhelm, T .
MOLECULAR & CELLULAR PROTEOMICS, 2004, 3 (11) :1083-1092
[7]   Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs [J].
Blanchette, M ;
Labourier, E ;
Green, RE ;
Brenner, SE ;
Rio, DC .
MOLECULAR CELL, 2004, 14 (06) :775-786
[8]   Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome [J].
Brown, V ;
Jin, P ;
Ceman, S ;
Darnell, JC ;
O'Donnell, WT ;
Tenenbaum, SA ;
Jin, XK ;
Feng, Y ;
Wilkinson, KD ;
Keene, JD ;
Darnell, RB ;
Warren, ST .
CELL, 2001, 107 (04) :477-487
[9]   Biosynthetic labeling of RNA with uracil phosphoribosyltransferase allows cell-specific microarray analysis of mRNA synthesis and decay [J].
Cleary, MD ;
Meiering, CD ;
Jan, E ;
Guymon, R ;
Boothroyd, JC .
NATURE BIOTECHNOLOGY, 2005, 23 (02) :232-237
[10]   Global control of gene expression in yeast by the Ccr4-Not complex [J].
Collart, MA .
GENE, 2003, 313 :1-16