Discovering the Targets of Drugs Via Computational Systems Biology

被引:27
作者
Chua, Hon Nian [1 ]
Roth, Frederick P. [1 ,2 ]
机构
[1] Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
[2] Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA
基金
美国国家卫生研究院;
关键词
MODE-OF-ACTION; INTERACTION NETWORKS; BIOACTIVE COMPOUNDS; EXPRESSION PROFILES; YEAST; GENOME; IDENTIFICATION; SCREEN; GENES; PREDICTION;
D O I
10.1074/jbc.R110.174797
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Computational systems biology is empowering the study of drug action. Studies on biological effects of chemical compounds have increased in scale and accessibility, allowing integration with other large-scale experimental data types. Here, we review computational approaches for elucidating the mechanisms of both intended and undesirable effects of drugs, with the collective potential to change the nature of drug discovery and pharmacological therapy.
引用
收藏
页码:23653 / 23658
页数:6
相关论文
共 54 条
[1]   The landscape of genetic complexity across 5,700 gene expression traits in yeast [J].
Brem, RB ;
Kruglyak, L .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (05) :1572-1577
[2]   Unfinished business: target-based drug discovery [J].
Brown, David .
DRUG DISCOVERY TODAY, 2007, 12 (23-24) :1007-1012
[3]  
Burns AR, 2010, NAT CHEM BIOL, V6, P549, DOI [10.1038/nchembio.380, 10.1038/NCHEMBIO.380]
[4]   Microarray-based method for monitoring yeast overexpression strains reveals small-molecule targets in TOR pathway [J].
Butcher, RA ;
Bhullar, BS ;
Perlstein, EO ;
Marsischky, G ;
LaBaer, J ;
Schreiber, SL .
NATURE CHEMICAL BIOLOGY, 2006, 2 (02) :103-109
[5]   Drug target identification using side-effect similarity [J].
Campillos, Monica ;
Kuhn, Michael ;
Gavin, Anne-Claude ;
Jensen, Lars Juhl ;
Bork, Peer .
SCIENCE, 2008, 321 (5886) :263-266
[6]   Using functional domain composition and support vector machines for prediction of protein subcellular location [J].
Chou, KC ;
Cai, YD .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (48) :45765-45769
[7]   Prediction of protein cellular attributes using pseudo-amino acid composition [J].
Chou, KC .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 2001, 43 (03) :246-255
[8]   Chemogenomic profiling on a genomewide scale using reverse-engineered gene networks [J].
di Bernardo, D ;
Thompson, MJ ;
Gardner, TS ;
Chobot, SE ;
Eastwood, EL ;
Wojtovich, AP ;
Elliott, SJ ;
Schaus, SE ;
Collins, JJ .
NATURE BIOTECHNOLOGY, 2005, 23 (03) :377-383
[9]   Multi-way clustering of microarray data using probabilistic sparse matrix factorization [J].
Dueck, D ;
Morris, QD ;
Frey, BJ .
BIOINFORMATICS, 2005, 21 :I144-I151
[10]   HUMAN HAPLOINSUFFICIENCY - ONE FOR SORROW, 2 FOR JOY [J].
FISHER, E ;
SCAMBLER, P .
NATURE GENETICS, 1994, 7 (01) :5-7