miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA

被引:846
作者
Hansen, Thomas B. [1 ]
Wiklund, Erik D. [1 ,2 ]
Bramsen, Jesper B. [1 ]
Villadsen, Sune B. [1 ]
Statham, Aaron L. [2 ]
Clark, Susan J. [2 ]
Kjems, Jorgen [1 ]
机构
[1] Aarhus Univ, Dept Mol Biol, Interdisciplinary Nanosci Ctr iNANO, DK-8000 Aarhus C, Denmark
[2] St Vincents Hosp, Garvan Inst Med Res, Canc Program, Epigenet Lab, Darlinghurst, NSW 2010, Australia
基金
英国医学研究理事会;
关键词
CDR1; circular RNA; miR-671; natural antisense transcript; nuclear microRNA; NEOPLASTIC CEREBELLAR DEGENERATION; HUMAN-CELLS; MESSENGER-RNAS; INTERFERING RNAS; MAMMALIAN-CELLS; DNA METHYLATION; LET-7; MICRORNA; NONCODING RNA; CANCER-CELLS; EXPRESSION;
D O I
10.1038/emboj.2011.359
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
MicroRNAs (miRNAs) are similar to 22 nt non-coding RNAs that typically bind to the 3' UTR of target mRNAs in the cytoplasm, resulting in mRNA destabilization and translational repression. Here, we report that miRNAs can also regulate gene expression by targeting non-coding antisense transcripts in human cells. Specifically, we show that miR-671 directs cleavage of a circular antisense transcript of the Cerebellar Degeneration-Related protein 1 (CDR1) locus in an Ago2-slicer-dependent manner. The resulting downregulation of circular antisense has a concomitant decrease in CDR1 mRNA levels, independently of heterochromatin formation. This study provides the first evidence for non-coding antisense transcripts as functional miRNA targets, and a novel regulatory mechanism involving a positive correlation between mRNA and antisense circular RNA levels. The EMBO Journal (2011) 30, 4414-4422. doi:10.1038/emboj.2011.359; Published online 30 September 2011
引用
收藏
页码:4414 / 4422
页数:9
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[1]   A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition [J].
Beltran, Manuel ;
Puig, Isabel ;
Pena, Cristina ;
Miguel Garcia, Jose ;
Belen Alvarez, Ana ;
Pena, Raul ;
Bonilla, Felix ;
Garcia de Herreros, Antonio .
GENES & DEVELOPMENT, 2008, 22 (06) :756-769
[2]   Improved silencing properties using small internally segmented interfering RNAs [J].
Bramsen, Jesper B. ;
Laursen, Maria B. ;
Damgaard, Christian K. ;
Lena, Suzy W. ;
Babu, B. Ravindra ;
Wengel, Jesper ;
Kjems, Jorgen .
NUCLEIC ACIDS RESEARCH, 2007, 35 (17) :5886-5897
[3]   Expression of Linear and Novel Circular Forms of an INK4/ARF-Associated Non-Coding RNA Correlates with Atherosclerosis Risk [J].
Burd, Christin E. ;
Jeck, William R. ;
Liu, Yan ;
Sanoff, Hanna K. ;
Wang, Zefeng ;
Sharpless, Norman E. .
PLOS GENETICS, 2010, 6 (12) :1-15
[4]   CIRCULAR TRANSCRIPTS OF THE TESTIS-DETERMINING GENE SRY IN ADULT-MOUSE TESTIS [J].
CAPEL, B ;
SWAIN, A ;
NICOLIS, S ;
HACKER, A ;
WALTER, M ;
KOOPMAN, P ;
GOODFELLOW, P ;
LOVELLBADGE, R .
CELL, 1993, 73 (05) :1019-1030
[5]  
Chendrimada TP, 2007, NATURE, V447, P823, DOI 10.1038/nature05841
[6]   Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy [J].
Crampton, Neal ;
Bonass, William A. ;
Kirkham, Jennifer ;
Rivetti, Claudio ;
Thomson, Neil H. .
NUCLEIC ACIDS RESEARCH, 2006, 34 (19) :5416-5425
[7]   CLONING OF A BRAIN PROTEIN IDENTIFIED BY AUTOANTIBODIES FROM A PATIENT WITH PARA-NEOPLASTIC CEREBELLAR DEGENERATION [J].
DROPCHO, EJ ;
CHEN, YT ;
POSNER, JB ;
OLD, LJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1987, 84 (13) :4552-4556
[8]   PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element [J].
Ebralidze, Alexander K. ;
Guibal, Florence C. ;
Steidl, Ulrich ;
Zhang, Pu ;
Lee, Sanghoon ;
Bartholdy, Boris ;
Jorda, Meritxell Alberich ;
Petkova, Victoria ;
Rosenbauer, Frank ;
Huang, Gang ;
Dayaram, Tajhal ;
Klupp, Johanna ;
O'Brien, Karen B. ;
Will, Britta ;
Hoogenkamp, Maarten ;
Borden, Katherine L. B. ;
Bonifer, Constanze ;
Tenen, Daniel G. .
GENES & DEVELOPMENT, 2008, 22 (15) :2085-2092
[9]   Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of β-secretase [J].
Faghihi, Mohammad Ali ;
Modarresi, Farzaneh ;
Khalil, Ahmad M. ;
Wood, Douglas E. ;
Sahagan, Barbara G. ;
Morgan, Todd E. ;
Finch, Caleb E. ;
Laurent, Georges St., III ;
Kenny, Paul J. ;
Wahlestedt, Claes .
NATURE MEDICINE, 2008, 14 (07) :723-730
[10]   A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence [J].
Forman, Joshua J. ;
Legesse-Miller, Aster ;
Coller, Hilary A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (39) :14879-14884