Temperature and pressure effects on conformational equilibria of alanine dipeptide in aqueous solution

被引:46
作者
Takekiyo, T
Imai, T
Kato, M
Taniguchi, Y [1 ]
机构
[1] Ritsumeikan Univ, Dept Appl Chem, Kustasu, Shiga 5258577, Japan
[2] Ritsumeikan Univ, Res Org Sci & Engn, Kustasu, Shiga 5258577, Japan
关键词
Raman spectroscopy; reference interaction site model (RISM) theory; alanine dipeptide; conformational equilibrium; aqueous solution; enthalpy; partial molar volume;
D O I
10.1002/bip.10548
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We investigated the temperature and pressure effects on conformational equilibria of N-acetyl-L-alanine-N'-methylamide (AAlaMA) in aqueous solution by Raman spectroscopy. Scattering intensities in the skeletal stretching mode of AAlaMA in aqueous solution were decomposed into some component bands by the spectra analysis. Our results indicate that each component band for AAlaMA adopts not only the P-II and alpha(R) conformations but also the C-7eq conformation. From temperature and pressure dependencies of the band intensities, we determined the enthalpy differences and the volume differences between the conformers. The C-7eq conformer is enthalpically most stable due to the intramolecular hydrogen bond. The partial molar volume of the C-7eq conformer is the smallest through the solvent-exclusion effect rather than the solute-solvent electrostatic interaction effect. (C) 2004 Wiley Periodicals, Inc.
引用
收藏
页码:283 / 290
页数:8
相关论文
共 42 条
[1]   Calculation of conformational transitions and barriers in solvated systems: Application to the alanine dipeptide in water [J].
Apostolakis, J ;
Ferrara, P ;
Caflisch, A .
JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (04) :2099-2108
[2]   CONFORMATIONAL-ANALYSIS OF DIPEPTIDES IN AQUEOUS-SOLUTION .2. MOLECULAR-STRUCTURE OF GLYCINE AND ALANINE DIPEPTIDES BY DEPOLARIZED RAYLEIGH-SCATTERING AND LASER RAMAN SPECTROSCOPY [J].
AVIGNON, M ;
GARRIGOU.C ;
BOTHOREL, P .
BIOPOLYMERS, 1973, 12 (07) :1651-1669
[3]   AMIDE MODES AND PROTEIN CONFORMATION [J].
BANDEKAR, J .
BIOCHIMICA ET BIOPHYSICA ACTA, 1992, 1120 (02) :123-143
[4]   THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS [J].
BERENDSEN, HJC ;
GRIGERA, JR ;
STRAATSMA, TP .
JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (24) :6269-6271
[5]  
BOHM HJ, 1991, J AM CHEM SOC, V113, P7129, DOI 10.1021/ja00019a007
[6]   SIMULATIONS OF PEPTIDE CONFORMATIONAL DYNAMICS AND THERMODYNAMICS [J].
BROOKS, CL ;
CASE, DA .
CHEMICAL REVIEWS, 1993, 93 (07) :2487-2502
[7]  
Chalikian TV, 1996, BIOPOLYMERS, V39, P619, DOI 10.1002/(SICI)1097-0282(199611)39:5<619::AID-BIP1>3.0.CO
[8]  
2-Z
[9]   Conformational equilibria of terminally blocked single amino acids at the water-hexane interface. A molecular dynamics study [J].
Chipot, C ;
Pohorille, A .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (01) :281-290
[10]   INTRAMOLECULAR HYDROGEN-BONDING IN DERIVATIVES OF BETA-ALANINE AND GAMMA-AMINO BUTYRIC-ACID - MODEL STUDIES FOR THE FOLDING OF UNNATURAL POLYPEPTIDE BACKBONES [J].
DADO, GP ;
GELLMAN, SH .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (03) :1054-1062