Caspase deficiency alters the murine gut microbiome

被引:71
作者
Brinkman, B. M. [2 ,3 ]
Hildebrand, F. [1 ]
Kubica, M. [2 ,3 ]
Goosens, D. [4 ,5 ]
del Favero, J. [4 ,5 ]
Declercq, W. [2 ,3 ]
Raes, J. [1 ]
Vandenabeele, P. [2 ,3 ]
机构
[1] Vrije Univ Brussel, VIB, Dept Mol & Cellular Interact, B-1050 Brussels, Belgium
[2] VIB, Dept Mol Biomed Res, Ghent, Belgium
[3] Univ Ghent, Dept Mol Biomed Res, B-9000 Ghent, Belgium
[4] VIB Dept Mol Genet, Antwerp, Belgium
[5] Univ Antwerp, Dept Mol Genet, B-2020 Antwerp, Belgium
关键词
caspase-1; caspase-3; caspase-7; knockout; gut microbiome; pyrosequencing; CHAIN FATTY-ACIDS; IL-1-BETA-CONVERTING ENZYME; DEFENSE; MICE;
D O I
10.1038/cddis.2011.101
中图分类号
Q2 [细胞生物学];
学科分类号
071013 [干细胞生物学];
摘要
Caspases are aspartate-specific cysteine proteases that have an essential role in apoptosis and inflammation, and contribute to the maintenance of homeostasis in the intestine. These facts, together with the knowledge that caspases are implicated in host-microbe crosstalk, prompted us to investigate the effect of caspase (Casp) 1, -3 and -7 deficiency on the composition of the murine gut microbiota. We observed significant changes in the abundance of the Firmicutes and Bacteroidetes phyla, in particular the Lachnospiraceae, Porphyromonodaceae and Prevotellacea families, when comparing Casp-1, -7 and -3 knockout mice with wild-type mice. Our data point toward an intricate relationship between these caspases and the composition of the murine gut microflora. Cell Death and Disease (2011) 2, e220; doi: 10.1038/cddis.2011.101; published online 20 September 2011
引用
收藏
页码:e220 / e220
页数:6
相关论文
共 40 条
[1]
Caspase-7 Activation by the Nlrc4/Ipaf Inflammasome Restricts Legionella pneumophila Infection [J].
Akhter, Anwari ;
Gavrilin, Mikhail A. ;
Frantz, Laura ;
Washington, Songcerae ;
Ditty, Cameron ;
Limoli, Dominique ;
Day, Colby ;
Sarkar, Anasuya ;
Newland, Christie ;
Butchar, Jonathan ;
Marsh, Clay B. ;
Wewers, Mark D. ;
Tridandapani, Susheela ;
Kanneganti, Thirumala-Devi ;
Amer, Amal O. .
PLOS PATHOGENS, 2009, 5 (04)
[2]
Enterotypes of the human gut microbiome [J].
Arumugam, Manimozhiyan ;
Raes, Jeroen ;
Pelletier, Eric ;
Le Paslier, Denis ;
Yamada, Takuji ;
Mende, Daniel R. ;
Fernandes, Gabriel R. ;
Tap, Julien ;
Bruls, Thomas ;
Batto, Jean-Michel ;
Bertalan, Marcelo ;
Borruel, Natalia ;
Casellas, Francesc ;
Fernandez, Leyden ;
Gautier, Laurent ;
Hansen, Torben ;
Hattori, Masahira ;
Hayashi, Tetsuya ;
Kleerebezem, Michiel ;
Kurokawa, Ken ;
Leclerc, Marion ;
Levenez, Florence ;
Manichanh, Chaysavanh ;
Nielsen, H. Bjorn ;
Nielsen, Trine ;
Pons, Nicolas ;
Poulain, Julie ;
Qin, Junjie ;
Sicheritz-Ponten, Thomas ;
Tims, Sebastian ;
Torrents, David ;
Ugarte, Edgardo ;
Zoetendal, Erwin G. ;
Wang, Jun ;
Guarner, Francisco ;
Pedersen, Oluf ;
de Vos, Willem M. ;
Brunak, Soren ;
Dore, Joel ;
Weissenbach, Jean ;
Ehrlich, S. Dusko ;
Bork, Peer .
NATURE, 2011, 473 (7346) :174-180
[3]
Apoptosis is an innate defense function of macrophages against Mycobacterium tuberculosis [J].
Behar, S. M. ;
Martin, C. J. ;
Booty, M. G. ;
Nishimura, T. ;
Zhao, X. ;
Gan, H. ;
Divangahi, M. ;
Remold, H. G. .
MUCOSAL IMMUNOLOGY, 2011, 4 (03) :279-287
[4]
QIIME allows analysis of high-throughput community sequencing data [J].
Caporaso, J. Gregory ;
Kuczynski, Justin ;
Stombaugh, Jesse ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
Costello, Elizabeth K. ;
Fierer, Noah ;
Pena, Antonio Gonzalez ;
Goodrich, Julia K. ;
Gordon, Jeffrey I. ;
Huttley, Gavin A. ;
Kelley, Scott T. ;
Knights, Dan ;
Koenig, Jeremy E. ;
Ley, Ruth E. ;
Lozupone, Catherine A. ;
McDonald, Daniel ;
Muegge, Brian D. ;
Pirrung, Meg ;
Reeder, Jens ;
Sevinsky, Joel R. ;
Tumbaugh, Peter J. ;
Walters, William A. ;
Widmann, Jeremy ;
Yatsunenko, Tanya ;
Zaneveld, Jesse ;
Knight, Rob .
NATURE METHODS, 2010, 7 (05) :335-336
[5]
Cotta M, 2006, PROKARYOTES: A HANDBOOK ON THE BIOLOGY OF BACTERIA, VOL 4, THIRD EDITION, P1002, DOI 10.1007/0-387-30744-3_35
[6]
Proteome-wide Substrate Analysis Indicates Substrate Exclusion as a Mechanism to Generate Caspase-7 Versus Caspase-3 Specificity [J].
Demon, Dieter ;
Van Damme, Petra ;
Vanden Berghe, Tom ;
Deceuninck, Annelies ;
Van Durme, Joost ;
Verspurten, Jelle ;
Helsens, Kenny ;
Impens, Francis ;
Wejda, Magdalena ;
Schymkowitz, Joost ;
Rousseau, Frederic ;
Madder, Annemieke ;
Vandekerckhove, Joel ;
Declercq, Wim ;
Gevaert, Kris ;
Vandenabeele, Peter .
MOLECULAR & CELLULAR PROTEOMICS, 2009, 8 (12) :2700-2714
[7]
Control of Intestinal Homeostasis, Colitis, and Colitis-Associated Colorectal Cancer by the Inflammatory Caspases [J].
Dupaul-Chicoine, Jeremy ;
Yeretssian, Garabet ;
Doiron, Karine ;
Bergstrom, Kirk S. B. ;
McIntire, Christian R. ;
LeBlanc, Philippe M. ;
Meunier, Charles ;
Turbide, Claire ;
Gros, Philippe ;
Beauchemin, Nicole ;
Vallance, Bruce A. ;
Saleh, Maya .
IMMUNITY, 2010, 32 (03) :367-378
[8]
Search and clustering orders of magnitude faster than BLAST [J].
Edgar, Robert C. .
BIOINFORMATICS, 2010, 26 (19) :2460-2461
[9]
NLRP6 Inflammasome Regulates Colonic Microbial Ecology and Risk for Colitis [J].
Elinav, Eran ;
Strowig, Till ;
Kau, Andrew L. ;
Henao-Mejia, Jorge ;
Thaiss, Christoph A. ;
Booth, Carmen J. ;
Peaper, David R. ;
Bertin, John ;
Eisenbarth, Stephanie C. ;
Gordon, Jeffrey I. ;
Flavell, Richard A. .
CELL, 2011, 145 (05) :745-757
[10]
The Intestinal Microbiota Plays a Role in Salmonella-Induced Colitis Independent of Pathogen Colonization [J].
Ferreira, Rosana B. R. ;
Gill, Navkiran ;
Willing, Benjamin P. ;
Antunes, L. Caetano M. ;
Russell, Shannon L. ;
Croxen, Matthew A. ;
Finlay, B. Brett .
PLOS ONE, 2011, 6 (05)