Tuning heme redox Potentials in the cytochrome c subunit of photosynthetic reaction centers

被引:58
作者
Voigt, P [1 ]
Knapp, EW [1 ]
机构
[1] Free Univ Berlin, Inst Chem, Dept Biol Chem & Pharm, D-14195 Berlin, Germany
关键词
D O I
10.1074/jbc.M307560200
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The photosynthetic reaction center ( RC) from Rhodopseudomonas viridis contains four cytochrome c hemes. They establish the initial part of the electron transfer ( ET) chain through the RC. Despite their chemical identity, their midpoint potentials cover an interval of 440 mV. The individual heme midpoint potentials determine the ET kinetics and are therefore tuned by specific interactions with the protein environment. Here, we use an electrostatic approach based on the solution of the linearized Poisson-Boltzmann equation to evaluate the determinants of individual heme redox potentials. Our calculated redox potentials agree within 25 meV with the experimentally measured values. The heme redox potentials are mainly governed by solvent accessibility of the hemes and propionic acids, by neutralization of the negative charges at the propionates through either protonation or formation of salt bridges, by interactions with other hemes, and to a lesser extent, with other titratable protein side chains. In contrast to earlier computations on this system, we used quantum chemically derived atomic charges, considered an equilibrium-distributed protonation pattern, and accounted for interdependencies of site-site interactions. We provide values for the working potentials of all hemes as a function of the solution redox potential, which are crucial for calculations of ET rates. We identify residues whose site-directed mutation might significantly influence ET processes in the cytochrome c part of the RC. Redox potentials measured on a previously generated mutant could be reproduced by calculations based on a model structure of the mutant generated from the wild type RC.
引用
收藏
页码:51993 / 52001
页数:9
相关论文
共 37 条
[1]   LANGMUIR-BLODGETT MONOLAYER FILMS OF THE RHODOPSEUDOMONAS-VIRIDIS REACTION CENTER - DETERMINATION OF THE ORDER OF THE HEMES IN THE CYTOCHROME-C SUBUNIT .2. [J].
ALEGRIA, G ;
DUTTON, PL .
BIOCHIMICA ET BIOPHYSICA ACTA, 1991, 1057 (02) :258-272
[2]   Simulation of electron-proton coupling with a Monte Carlo method:: Application to cytochrome c3 using continuum electrostatics [J].
Baptista, AM ;
Martel, PJ ;
Soares, CM .
BIOPHYSICAL JOURNAL, 1999, 76 (06) :2978-2998
[3]   ELECTROSTATIC CALCULATIONS OF THE PKA VALUES OF IONIZABLE GROUPS IN BACTERIORHODOPSIN [J].
BASHFORD, D ;
GERWERT, K .
JOURNAL OF MOLECULAR BIOLOGY, 1992, 224 (02) :473-486
[4]   MULTIPLE-SITE TITRATION CURVES OF PROTEINS - AN ANALYSIS OF EXACT AND APPROXIMATE METHODS FOR THEIR CALCULATION [J].
BASHFORD, D ;
KARPLUS, M .
JOURNAL OF PHYSICAL CHEMISTRY, 1991, 95 (23) :9556-9561
[5]   A WELL-BEHAVED ELECTROSTATIC POTENTIAL BASED METHOD USING CHARGE RESTRAINTS FOR DERIVING ATOMIC CHARGES - THE RESP MODEL [J].
BAYLY, CI ;
CIEPLAK, P ;
CORNELL, WD ;
KOLLMAN, PA .
JOURNAL OF PHYSICAL CHEMISTRY, 1993, 97 (40) :10269-10280
[6]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[7]   POLAR HYDROGEN POSITIONS IN PROTEINS - EMPIRICAL ENERGY PLACEMENT AND NEUTRON-DIFFRACTION COMPARISON [J].
BRUNGER, AT ;
KARPLUS, M .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1988, 4 (02) :148-156
[8]   Uphill electron transfer in the tetraheme cytochrome subunit of the Rhodopseudomonas viridis photosynthetic reaction center:: Evidence from site-directed mutagenesis [J].
Chen, IP ;
Mathis, P ;
Koepke, J ;
Michel, H .
BIOCHEMISTRY, 2000, 39 (13) :3592-3602
[9]   APPLICATION OF RESP CHARGES TO CALCULATE CONFORMATIONAL ENERGIES, HYDROGEN-BOND ENERGIES, AND FREE-ENERGIES OF SOLVATION [J].
CORNELL, WD ;
CIEPLAK, P ;
BAYLY, CI ;
KOLLMAN, PA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1993, 115 (21) :9620-9631
[10]   STRUCTURE OF THE PROTEIN SUBUNITS IN THE PHOTOSYNTHETIC REACTION CENTER OF RHODOPSEUDOMONAS-VIRIDIS AT 3A RESOLUTION [J].
DEISENHOFER, J ;
EPP, O ;
MIKI, K ;
HUBER, R ;
MICHEL, H .
NATURE, 1985, 318 (6047) :618-624