Using BioMart as a framework to manage and query pancreatic cancer data

被引：7

作者：

Cutts, Rosalind J. ^{[1
]}

Gadaleta, Emanuela ^{[1
]}

Lemoine, Nicholas R. ^{[1
]}

Chelala, Claude ^{[1
]}

机构：

[1] Queen Mary Univ London, Ctr Mol Oncol, Barts Canc Inst, London EC1M 6BQ, England

来源：

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | 2011年

关键词：

EXPRESSION DATABASE; INTEGRATION; RESOURCES; PLATFORM;

D O I：

10.1093/database/bar024

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

We describe the Pancreatic Expression Database (PED), the first cancer database originally designed based on the BioMart infrastructure. The PED portal brings together multidimensional pancreatic cancer data from the literature including genomic, proteomic, miRNA and gene expression profiles. Based on the BioMart 0.7 framework, the database is easily integrated with other BioMart-compliant resources, such as Ensembl and Reactome, to give access to a wide range of annotations alongside detailed experimental conditions. This article is intended to give an overview of PED, describe its data content and work through examples of how to successfully mine and integrate pancreatic cancer data sets and other BioMart resources. Database URL: http://www.pancreasexpression.org

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页数：6

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