An alternating chain of spider-like tris(peptides) stabilized by stacking and by N-H••• N and N-H••• O=C hydrogen bonding

被引:16
作者
Kannappan, R
Tooke, DM
Spek, AL
Reedijk, J
机构
[1] Leiden Univ, Leiden Inst Chem, Gorlaeus Labs, NL-2300 RA Leiden, Netherlands
[2] Univ Utrecht, Dept Crystal & Struct Chem, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
关键词
scaffold; peptide linkage; hydrogen bonding;
D O I
10.1016/j.molstruc.2005.04.043
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The X-ray crystal structure of the novel spider-like trispeptide N,N',N"-tris(2-aminopyridine)benzene-1,3,5-tricarboxamide shows the unexpected formation of a new extended polymeric architecture. The structure is characterized by cooperative hydrogen bonding generating neighbouring pairs by self-assembly, and stacking between rings. Pairs of amide groups related by an inversion centre are connected into dimers via two N-(HOcarbonyl)-O-... and two N-(HNpyridyl)-N-... intermolecular hydrogen bonds. The offset-stacked layers are tightly inter-linked (spacing of 3.477 angstrom) by hydrogen bonding and aromatic pi-pi stacking interactions. These dimers are further linked into polymeric chains by hydrogen bonding through bridging methanol solvent molecules. The central aromatic rings of molecules in adjacent dimers are once again related by inversion symmetry, with a perpendicular separation of 3.619 angstrom. (c) 2005 Elsevier B.V. All rights reserved.
引用
收藏
页码:55 / 59
页数:5
相关论文
共 22 条
[1]   Absolute helical arrangement of stacked benzene rings: Heterogeneous double-helical interaction comprising a hydrogen-bonding belt and an offset parallel aromatic-aromatic-interaction array [J].
Azumaya, I ;
Uchida, D ;
Kato, T ;
Yokoyama, A ;
Tanatani, A ;
Takayanagi, H ;
Yokozawa, T .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2004, 43 (11) :1360-1363
[2]   Designer crystals: intermolecular interactions, network structures and supramolecular synthons [J].
Desiraju, GR .
CHEMICAL COMMUNICATIONS, 1997, (16) :1475-1482
[3]   SUPRAMOLECULAR SYNTHONS IN CRYSTAL ENGINEERING - A NEW ORGANIC-SYNTHESIS [J].
DESIRAJU, GR .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION IN ENGLISH, 1995, 34 (21) :2311-2327
[4]   An intensity evaluation method:: EVAL-14 [J].
Duisenberg, AJM ;
Kroon-Batenburg, LMJ ;
Schreurs, AMM .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2003, 36 :220-229
[5]   INDEXING IN SINGLE-CRYSTAL DIFFRACTOMETRY WITH AN OBSTINATE LIST OF REFLECTIONS [J].
DUISENBERG, AJM .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1992, 25 :92-96
[6]   HYDROGEN-BONDING CONTROL OF MOLECULAR AGGREGATION - SELF-COMPLEMENTARY SUBUNITS LEAD TO ROD-SHAPED STRUCTURES IN THE SOLID-STATE [J].
FAN, EK ;
YANG, J ;
GEIB, SJ ;
STONER, TC ;
HOPKINS, MD ;
HAMILTON, AD .
JOURNAL OF THE CHEMICAL SOCIETY-CHEMICAL COMMUNICATIONS, 1995, (12) :1251-1252
[7]   MOLECULAR RECOGNITION IN THE SOLID-STATE - CONTROLLED ASSEMBLY OF HYDROGEN-BONDED MOLECULAR SHEETS [J].
GARCIATELLADO, F ;
GEIB, SJ ;
GOSWAMI, S ;
HAMILTON, AD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1991, 113 (24) :9265-9269
[8]   SPONTANEOUS ASSEMBLY OF A HINGED COORDINATION NETWORK [J].
GARDNER, GB ;
VENKATARAMAN, D ;
MOORE, JS ;
LEE, S .
NATURE, 1995, 374 (6525) :792-795
[9]   SELF-ASSEMBLING ORGANIC NANOTUBES BASED ON A CYCLIC PEPTIDE ARCHITECTURE [J].
GHADIRI, MR ;
GRANJA, JR ;
MILLIGAN, RA ;
MCREE, DE ;
KHAZANOVICH, N .
NATURE, 1993, 366 (6453) :324-327
[10]  
Hooft RWW, 1998, COLLECT NONIUS BV