Control genes in quantitative molecular biological techniques:: the variability of invariance

被引:214
作者
Stürzenbaum, SR [1 ]
Kille, P [1 ]
机构
[1] Cardiff Univ, Sch Biosci, BIOSI 2, Cardiff, S Glam, Wales
来源
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY | 2001年 / 130卷 / 03期
关键词
invariant control; housekeeping; GAPDH; cyclophilin; actin; rRNA;
D O I
10.1016/S1096-4959(01)00440-7
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The measurement of transcript levels constitutes the foundation of today's molecular genetics. Independent of the techniques used, quantifications are generally normalised using invariant control genes to account for sample handling, loading and experimental variation. All of the widely used control genes are evaluated, dissecting different methodological approaches and issues regarding the experimental context (e.g. development and tissue type). Furthermore, the major sources of error are highlighted when applying these techniques. Finally, different approaches undertaken to assess the invariance of control genes are critically analysed to generate a procedure that will help to discern the best control for novel experiments. (C) 2001 Elsevier Science Inc. All rights reserved.
引用
收藏
页码:281 / 289
页数:9
相关论文
共 50 条
[1]   Cyclophilins are induced by hypoxia and heat stress in myogenic cells [J].
Andreeva, L ;
Motterlini, R ;
Green, CJ .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1997, 237 (01) :6-9
[2]   COMPARISON OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AND 28S-RIBOSOMAL RNA GENE-EXPRESSION AS RNA LOADING CONTROLS FOR NORTHERN BLOT ANALYSIS OF CELL-LINES OF VARYING MALIGNANT POTENTIAL [J].
BHATIA, P ;
TAYLOR, WR ;
GREENBERG, AH ;
WRIGHT, JA .
ANALYTICAL BIOCHEMISTRY, 1994, 216 (01) :223-226
[3]   Presence of cyclophilin a in synovial fluids of patients with rheumatoid arthritis [J].
Billich, A ;
Winkler, G ;
Aschauer, H ;
Rot, A ;
Peichl, P .
JOURNAL OF EXPERIMENTAL MEDICINE, 1997, 185 (05) :975-980
[4]   Pancreatic GAPDH gene expression during ontogeny and acute pancreatitis induced by caerulein [J].
Calvo, EL ;
Boucher, C ;
Coulombe, Z ;
Morisset, J .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1997, 235 (03) :636-640
[5]  
Del Prete D, 1998, EXP NEPHROL, V6, P563
[6]   AN IMPROVED METHOD FOR ABSOLUTE QUANTIFICATION OF MESSENGER-RNA USING MULTIPLEX POLYMERASE CHAIN-REACTION - DETERMINATION OF RENIN AND ANGIOTENSINOGEN MESSENGER-RNA LEVELS IN VARIOUS TISSUES [J].
DOSTAL, DE ;
ROTHBLUM, KN ;
BAKER, KM .
ANALYTICAL BIOCHEMISTRY, 1994, 223 (02) :239-250
[7]  
Drew JS, 1997, CAN J PHYSIOL PHARM, V75, P869
[8]   Apoptosis rate can be accelerated or decelerated by overexpression or reduction of the level of elongation factor-1α [J].
Duttaroy, A ;
Bourbeau, D ;
Wang, XL ;
Wang, E .
EXPERIMENTAL CELL RESEARCH, 1998, 238 (01) :168-176
[9]   INVESTIGATION OF THE EXPRESSION OF HOUSEKEEPING GENES IN NON-HODGKINS-LYMPHOMA [J].
FINNEGAN, MCM ;
GOEPEL, JR ;
HANCOCK, BW ;
GOYNS, MH .
LEUKEMIA & LYMPHOMA, 1993, 10 (4-5) :387-393
[10]   CYCLOPHILIN AND PEPTIDYL-PROLYL CIS-TRANS ISOMERASE ARE PROBABLY IDENTICAL PROTEINS [J].
FISCHER, G ;
WITTMANNLIEBOLD, B ;
LANG, K ;
KIEFHABER, T ;
SCHMID, FX .
NATURE, 1989, 337 (6206) :476-478