BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

被引:322
作者
Thompson, JD [1 ]
Plewniak, F [1 ]
Poch, O [1 ]
机构
[1] ULP, INSERM, CNRS, Inst Genet & Biol Mol & Cellulaire, F-67404 Illkirch Graffenstaden, France
关键词
D O I
10.1093/bioinformatics/15.1.87
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
BAliBASE is a database of manually refined multiple sequence alignments categorized by cove blocks of conservation sequence length, similarity, and the presence of insertions and N/C-terminal extensions.
引用
收藏
页码:87 / 88
页数:2
相关论文
共 18 条
[1]  
DEPERIEUX E, 1997, COMPUT APPL BIOSCI, V13, P249
[2]  
Eddy S R, 1995, Proc Int Conf Intell Syst Mol Biol, V3, P114
[3]   Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments [J].
Gotoh, O .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 264 (04) :823-838
[4]   Touring protein fold space with Dali/FSSP [J].
Holm, L ;
Sander, C .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :316-319
[5]   PDBsum: a Web-based database of summaries and analyses of all PDB structures [J].
Laskowski, RA ;
Hutchinson, EG ;
Michie, AD ;
Wallace, AC ;
Jones, ML ;
Thornton, JM .
TRENDS IN BIOCHEMICAL SCIENCES, 1997, 22 (12) :488-490
[6]   THREADING A DATABASE OF PROTEIN CORES [J].
MADEJ, T ;
GIBRAT, JF ;
BRYANT, SH .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 23 (03) :356-369
[7]  
MCCLURE MA, 1994, MOL BIOL EVOL, V11, P571
[8]  
MIZUGUCHI K, 1998, IN PRESS PROTEIN SCI
[9]   Multiple DNA and protein sequence alignment based on segment-to-segment comparison [J].
Morgenstern, B ;
Dress, A ;
Werner, T .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (22) :12098-12103
[10]   COFFEE: An objective function for multiple sequence alignments [J].
Notredame, C ;
Holm, L ;
Higgins, DG .
BIOINFORMATICS, 1998, 14 (05) :407-422