InSatDb: a microsatellite database of fully sequenced insect genomes

被引：35

作者：

Archak, Sunil ^{[1
]}

Meduri, Eshwar ^{[1
]}

Kumar, P. Sravana ^{[1
]}

Nagaraju, J. ^{[1
]}

机构：

[1] Ctr DNA Fingerprinting & Diagnost, Genet Mol Lab, Hyderabad 500076, Andhra Pradesh, India

来源：

NUCLEIC ACIDS RESEARCH | 2007年 / 35卷

关键词：

D O I：

10.1093/nar/gkl778

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

InSatDb presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm). InSatDb allows users to obtain microsatellites annotated with size (in base pairs and repeat units); genomic location (exon, intron, up-stream or transposon); nature (perfect or imperfect); and sequence composition (repeat motif and GC%). One can access microsatellite cluster (compound repeats) information and a list of microsatellites with conserved flanking sequences (microsatellite family or paralogs). InSatDb is complete with the insects information, web links to find details, methodology and a tutorial. A separate 'Analysis' section illustrates the comparative genomic analysis that can be carried out using the output. InSatDb is available at www.cdfd.org.in/insatdb.

引用

页码：D36 / D39

页数：4

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