Draft Genome Sequence of the Paenibacillus polymyxa Type Strain (ATCC 842T), a Plant Growth-Promoting Bacterium

被引:29
作者
Jeong, Haeyoung [1 ]
Park, Soo-Young [1 ]
Chung, Won-Hyong [2 ]
Kim, Sun Hong [1 ]
Kim, Namshin [2 ]
Park, Seung-Hwan [1 ,3 ]
Kim, Jihyun F. [1 ,3 ]
机构
[1] KRIBB, Ind Biotechnol & Bioenergy Res Ctr, Taejon 305806, South Korea
[2] KRIBB, Korean Bioinformat Ctr, Taejon 305806, South Korea
[3] UST, Biosyst & Bioengn Program, Taejon 305350, South Korea
关键词
RIBOSOMAL-RNA; BACILLUS; IDENTIFICATION; E681; RHIZOBACTERIUM; BIOSYNTHESIS; ECOLOGY; GENES;
D O I
10.1128/JB.05447-11
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Paenibacillus polymyxa is an endospore-forming Gram-positive soil bacterium that is well-known for its ability to promote plant growth. Here we report the draft genome sequence of P. polymyxa ATCC 842(T), the type strain of the species P. polymyxa, and the family Paenibacillaceae. The P. polymyxa genome contains a repertoire of biosynthetic genes for antibiotics and hydrolytic enzymes that account for its beneficial effects in the rhizosphere to the host plants it associates with.
引用
收藏
页码:5026 / 5027
页数:2
相关论文
共 20 条
[1]  
ASH C, 1993, ANTON LEEUW INT J G, V64, P253
[2]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[3]   Identification and functional analysis of the fusaricidin biosynthetic gene of Paenibacillus polymyxa E681 [J].
Choi, Soo-Keun ;
Park, Soo-Young ;
Kim, Rumi ;
Lee, Choong-Hwan ;
Kim, Jihyun F. ;
Park, Seung-Hwan .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2008, 365 (01) :89-95
[4]   Identification of a Polymyxin Synthetase Gene Cluster of Paenibacillus polymyxa and Heterologous Expression of the Gene in Bacillus subtilis [J].
Choi, Soo-Keun ;
Park, Soo-Young ;
Kim, Rumi ;
Kim, Seong-Bin ;
Lee, Choong-Hwan ;
Kim, Jihyun F. ;
Park, Seung-Hwan .
JOURNAL OF BACTERIOLOGY, 2009, 191 (10) :3350-3358
[5]   Characterization of nitrogen-fixing Paenibacillus species by polymerase chain reaction-restriction fragment length polymorphism analysis of part of genes encoding 16S rRNA and 23S rRNA and by multilocus enzyme electrophoresis [J].
Coelho, MRR ;
von der Weid, I ;
Zahner, V ;
Seldin, L .
FEMS MICROBIOLOGY LETTERS, 2003, 222 (02) :243-250
[6]   Ecology of Bacillus and Paenibacillus spp. in agricultural systems [J].
Gardener, BBM .
PHYTOPATHOLOGY, 2004, 94 (11) :1252-1258
[7]   RESPONSE OF CRESTED WHEATGRASS (AGROPYRON-CRISTATUM L), PERENNIAL RYEGRASS (LOLIUM, PERENNE) AND WHITE CLOVER (TRIFOLIUM-REPENS L) TO INOCULATION WITH BACILLUS-POLYMYXA [J].
HOLL, FB ;
CHANWAY, CP ;
TURKINGTON, R ;
RADLEY, RA .
SOIL BIOLOGY & BIOCHEMISTRY, 1988, 20 (01) :19-24
[8]  
Jeong H, 2006, J MICROBIOL BIOTECHN, V16, P1650
[9]   Genome Sequence of the Polymyxin-Producing Plant-Probiotic Rhizobacterium Paenibacillus polymyxa E681 [J].
Kim, Jihyun F. ;
Jeong, Haeyoung ;
Park, Soo-Young ;
Kim, Seong-Bin ;
Park, Yon Kyoung ;
Choi, Soo-Keun ;
Ryu, Choong-Min ;
Hur, Cheol-Goo ;
Ghim, Sa-Youl ;
Oh, Tae Kwang ;
Kim, Jae Jong ;
Park, Chang Seuk ;
Park, Seung-Hwan .
JOURNAL OF BACTERIOLOGY, 2010, 192 (22) :6103-6104
[10]   AutoFACT: An (Auto)under-barmatic (F)under-barunctional (A)under-barnnotation and (C)under-barlassification (T)under-barool [J].
Koski, LB ;
Gray, MW ;
Lang, BF ;
Burger, G .
BMC BIOINFORMATICS, 2005, 6 (1)