Signal assignments and chemical-shift structural analysis of uniformly 13C, 15N-labeled peptide, mastoparan-X, by multidimensional solid-state NMR under magic-angle spinning

被引:31
作者
Fujiwara, T
Todokoro, Y
Yanagishita, H
Tawarayama, M
Kohno, T
Wakamatsu, K
Akutsu, H
机构
[1] Osaka Univ, Inst Prot Res, Suita, Osaka 5650871, Japan
[2] Yokohama Natl Univ, Dept Chem & Biotechnol, Yokohama, Kanagawa 2408501, Japan
[3] Mitsubishi Kagaku Inst Life Sci MITILS, Tokyo 1948511, Japan
[4] Gunma Univ, Dept Biochem Sci, Kiryu, Gumma 3768515, Japan
关键词
isotope-labeling; magic-angle spinning; mastoparan-X; multidimensional NMR; recoupling; signal assignment; solid-state NMR;
D O I
10.1023/B:JNMR.0000015377.17021.b0
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Carbon-13 and nitrogen-15 signals of fully isotope-labeled 15-residue peptide, glycinated mastoparan-X, in a solid state were assigned by two- and three-dimensional NMR experiments under magic-angle spinning conditions. Intra-residue spin connectivities were obtained with multidimensional correlation experiments for C'-C-alpha-C-beta and N-C-alpha-C-beta. Sequence specific assignments were performed with inter-residue C-alpha-C-alpha and N-(CCbeta)-C-alpha correlation experiments. Pulse sequences for these experiments have mixing periods under recoupled zero- and double-quantum C-13-C-13 and N-15-C-13 dipolar interactions. These correlation spectra allowed the complete assignments of C-13 and N-15 backbone and C-13(beta) signals. Chemical shift analysis of the C-13 and N-15 signals based on empirical and quantum chemical databases for proteins indicated that the backbone between residues 3 and 14 forms alpha-helix and residue 2 has extended conformation in the solid state. This structure was compared with the G-protein- and membrane-bound structures of mastoparan-X.
引用
收藏
页码:311 / 325
页数:15
相关论文
共 58 条
[1]  
[Anonymous], 2018, Protein nmr spectroscopy: principles and practice
[2]   Soft-triple resonance solid-state NMR experiments for assignments of U-13C, 15N labeled peptides and proteins [J].
Astrof, NS ;
Griffin, RG .
JOURNAL OF MAGNETIC RESONANCE, 2002, 158 (1-2) :157-163
[3]   Amyloid fibril formation by Aβ16-22, a seven-residue fragment of the Alzheimer's β-amyloid peptide, and structural characterization by solid state NMR [J].
Balbach, JJ ;
Ishii, Y ;
Antzutkin, ON ;
Leapman, RD ;
Rizzo, NW ;
Dyda, F ;
Reed, J ;
Tycko, R .
BIOCHEMISTRY, 2000, 39 (45) :13748-13759
[4]   Probing hydrogen bonds in the antibody-bound HIV-1 gp120 V3 loop by solid state NMR REDOR measurements [J].
Balbach, JJ ;
Yang, J ;
Weliky, DP ;
Steinbach, PJ ;
Tugarinov, V ;
Anglister, J ;
Tycko, R .
JOURNAL OF BIOMOLECULAR NMR, 2000, 16 (04) :313-327
[5]  
Baldus M, 1998, MOL PHYS, V95, P1197, DOI 10.1080/00268979809483251
[6]   Correlation experiments for assignment and structure elucidation of immobilized polypeptides under magic angle spinning [J].
Baldus, M .
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2002, 41 (1-2) :1-47
[7]   HETERONUCLEAR DECOUPLING IN ROTATING SOLIDS [J].
BENNETT, AE ;
RIENSTRA, CM ;
AUGER, M ;
LAKSHMI, KV ;
GRIFFIN, RG .
JOURNAL OF CHEMICAL PHYSICS, 1995, 103 (16) :6951-6958
[8]   Homonuclear radio frequency-driven recoupling in rotating solids [J].
Bennett, AE ;
Rienstra, CM ;
Griffiths, JM ;
Zhen, WG ;
Lansbury, PT ;
Griffin, RG .
JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (22) :9463-9479
[9]  
Bevington P., 2002, Data Reduction and Error Analysis for the Physical Sciences, V3rd ed.
[10]   Intrinsic asymmetry in multidimensional solid-state NMR correlation spectra [J].
Caldarelli, S ;
Emsley, L .
JOURNAL OF MAGNETIC RESONANCE, 1998, 130 (02) :233-237