A minor groove RNA triple helix within the catalytic core of a group I intron

被引:75
作者
Szewczak, AA [1 ]
Ortoleva-Donnelly, L [1 ]
Ryder, SP [1 ]
Moncoeur, E [1 ]
Strobel, SA [1 ]
机构
[1] Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1038/4146
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Close packing of several double helical and single stranded RNA elements is required for the Tetrahymena group I ribozyme to achieve catalysis. The chemical basis of these packing interactions is largely unknown. Using nucleotide analog interference suppression (NAIS), we demonstrate that the PI substrate helix and J8/7 single stranded segment form an extended minor groove triple helix within the catalytic core of the ribozyme, Because each triple in the complex is mediated by at least one 2'-OH group, this substrate recognition triplex is unique to RNA and is fundamentally different from major groove homopurine-homopyrimidine triplexes. We have incorporated these biochemical data into a structural model of the ribozyme core that explains how the J8/7 strand organizes several helices within this complex RNA tertiary structure.
引用
收藏
页码:1037 / 1042
页数:6
相关论文
共 31 条
[1]   2ND STRUCTURAL MOTIF FOR RECOGNITION OF DNA BY OLIGONUCLEOTIDE-DIRECTED TRIPLE-HELIX FORMATION [J].
BEAL, PA ;
DERVAN, PB .
SCIENCE, 1991, 251 (4999) :1360-1363
[2]   Visualizing metal-ion-binding sites in group I introns by iron(II)-mediated Fenton reactions [J].
Berens, C ;
Streicher, B ;
Schroeder, R ;
Hillen, W .
CHEMISTRY & BIOLOGY, 1998, 5 (03) :163-175
[3]   U-PB GEOCHRONOLOGICAL CONSTRAINTS ON THE VOLCANIC EVOLUTION OF THE MIRA (AVALON) TERRANE, SOUTHEASTERN CAPE-BRETON ISLAND, NOVA-SCOTIA [J].
BEVIER, ML ;
BARR, SM ;
WHITE, CE ;
MACDONALD, AS .
CANADIAN JOURNAL OF EARTH SCIENCES, 1993, 30 (01) :1-10
[4]   Crystal structure of a group I ribozyme domain: Principles of RNA packing [J].
Cate, JH ;
Gooding, AR ;
Podell, E ;
Zhou, KH ;
Golden, BL ;
Kundrot, CE ;
Cech, TR ;
Doudna, JA .
SCIENCE, 1996, 273 (5282) :1678-1685
[5]  
CECH TR, 1996, CATALYTIC RNA, V10, P1
[6]   METAL COORDINATION SITES THAT CONTRIBUTE TO STRUCTURE AND CATALYSIS IN THE GROUP-I INTRON FROM TETRAHYMENA [J].
CHRISTIAN, EL ;
YARUS, M .
BIOCHEMISTRY, 1993, 32 (17) :4475-4480
[7]   ANALYSIS OF THE ROLE OF PHOSPHATE OXYGENS IN THE GROUP-I INTRON FROM TETRAHYMENA [J].
CHRISTIAN, EL ;
YARUS, M .
JOURNAL OF MOLECULAR BIOLOGY, 1992, 228 (03) :743-758
[8]   ENZYMATIC-SYNTHESIS OF 2'-MODIFIED NUCLEIC-ACIDS - IDENTIFICATION OF IMPORTANT PHOSPHATE AND RIBOSE MOIETIES IN RNASE-P SUBSTRATES [J].
CONRAD, F ;
HANNE, A ;
GAUR, RK ;
KRUPP, G .
NUCLEIC ACIDS RESEARCH, 1995, 23 (11) :1845-1853
[9]   A COMPARATIVE DATABASE OF GROUP INTRON STRUCTURES [J].
DAMBERGER, SH ;
GUTELL, RR .
NUCLEIC ACIDS RESEARCH, 1994, 22 (17) :3508-3510
[10]   A preorganized active site in the crystal structure of the Tetrahymena ribozyme [J].
Golden, BL ;
Gooding, AR ;
Podell, ER ;
Cech, TR .
SCIENCE, 1998, 282 (5387) :259-264