Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence

被引:142
作者
Barret, Matthieu [1 ]
Morrissey, John P.
O'Gara, Fergal [1 ]
机构
[1] Natl Univ Ireland Univ Coll Cork, Dept Microbiol, BIOMERIT Res Ctr, Cork, Ireland
关键词
PGPR; Rhizosphere competence; Transcriptome; Process-centric approach; PSEUDOMONAS-FLUORESCENS F113; VIVO EXPRESSION TECHNOLOGY; III SECRETION SYSTEM; ANTIFUNGAL GENE-EXPRESSION; SOIL BACTERIAL COMMUNITIES; COLRS 2-COMPONENT SYSTEM; TOMATO ROOT COLONIZATION; BIOCONTROL STRAIN CHA0; FUNGUS PYTHIUM-ULTIMUM; GRAMINIS VAR. TRITICI;
D O I
10.1007/s00374-011-0605-x
中图分类号
S15 [土壤学];
学科分类号
0903 ; 090301 ;
摘要
In soil, some specific bacterial populations, called plant growth-promoting rhizobacteria are able to promote plant growth and/or reduce the incidence of soil-borne diseases. Rhizosphere competence is an important prerequisite for the efficacy of these biocontrol strains. Therefore, over decades, multiple approaches have been combined to understand the molecular basis of bacterial traits involved in rhizosphere competence. This review addresses the bacterial genes expressed during bacterial-plant interactions in the rhizosphere of different plant species. The distribution of these key genes in natural populations of rhizobacteria is also discussed.
引用
收藏
页码:729 / 743
页数:15
相关论文
共 126 条
[1]   The putative permease PhIE of Pseudomonas fluorescens F113 has a role in 2,4-diacetylphloroglucinol resistance and in general stress tolerance [J].
Abbas, A ;
McGuire, JE ;
Crowley, D ;
Baysse, C ;
Dow, M ;
O'Gara, F .
MICROBIOLOGY-SGM, 2004, 150 :2443-2450
[2]   Characterization of interactions between the transcriptional repressor PhlF and its binding site at the phlA promoter in Pseudomonas fluorescens F113 [J].
Abbas, A ;
Morrissey, JP ;
Marquez, PC ;
Sheehan, MM ;
Delany, IR ;
O'Gara, F .
JOURNAL OF BACTERIOLOGY, 2002, 184 (11) :3008-3016
[3]   PHYLOGENETIC IDENTIFICATION AND IN-SITU DETECTION OF INDIVIDUAL MICROBIAL-CELLS WITHOUT CULTIVATION [J].
AMANN, RI ;
LUDWIG, W ;
SCHLEIFER, KH .
MICROBIOLOGICAL REVIEWS, 1995, 59 (01) :143-169
[4]   Pseudomonas aeruginosa PAO1 virulence factors and poplar tree response in the rhizosphere [J].
Attila, Can ;
Ueda, Akihiro ;
Cirillo, Suat L. G. ;
Cirillo, Jeffrey D. ;
Chen, Wilfred ;
Wood, Thomas K. .
MICROBIAL BIOTECHNOLOGY, 2008, 1 (01) :17-29
[5]   The role of root exudates in rhizosphere interations with plants and other organisms [J].
Bais, Harsh P. ;
Weir, Tiffany L. ;
Perry, Laura G. ;
Gilroy, Simon ;
Vivanco, Jorge M. .
ANNUAL REVIEW OF PLANT BIOLOGY, 2006, 57 :233-266
[6]   Patatin-like proteins: a new family of lipolytic enzymes present in bacteria? [J].
Banerji, S ;
Flieger, A .
MICROBIOLOGY-SGM, 2004, 150 :522-525
[7]   In vivo expression technology (IVET) selection of genes of Rhizobium leguminosarum biovar viciae A34 expressed in the rhizosphere [J].
Barr, Michelle ;
East, Alison K. ;
Leonard, Mary ;
Mauchline, Tim H. ;
Poole, Philip S. .
FEMS MICROBIOLOGY LETTERS, 2008, 282 (02) :219-227
[8]   The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp [J].
Barret, M. ;
Frey-Klett, P. ;
Boutin, M. ;
Guillerm-Erckelboudt, A. -Y. ;
Martin, F. ;
Guillot, L. ;
Sarniguet, A. .
NEW PHYTOLOGIST, 2009, 181 (02) :435-447
[9]   Effect of Wheat Roots Infected with the Pathogenic Fungus Gaeumannomyces graminis var. tritici on Gene Expression of the Biocontrol Bacterium Pseudomonas fluorescens Pf29Arp [J].
Barret, Matthieu ;
Frey-Klett, Pascale ;
Guillerm-Erckelboudt, Anne-Yvonne ;
Boutin, Morgane ;
Guernec, Gregory ;
Sarniguet, Alain .
MOLECULAR PLANT-MICROBE INTERACTIONS, 2009, 22 (12) :1611-1623
[10]   Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere [J].
Berg, Gabriele ;
Smalla, Kornelia .
FEMS MICROBIOLOGY ECOLOGY, 2009, 68 (01) :1-13